>SHA718 (SHA718Q) /CSM/SH/SHA7-A/SHA718Q.Seq.d/
AAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACCAGGTGCTA
TTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTTGTTTAG
GTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAACTAAAC
TTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAAAAGTTG
TTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTGTCTATT
CTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCAA
AGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAATCAA
ATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTCTATTAT
TGTAAAAAAGAAAAAAAAAAXXXXXXXXXX

NYSKMTGKVVVKTTNAPGAIGPYSQAIIANNQVFVSGCLGIDKDTMQFTSETDVSIQTKL
ALTNMKNIVEAAGSSMEKVVKTTILLKSMDDFQAVNTVYSTFFPVDPPARSTFAVACLPK
NALVEIEAIAIHQ*tegksnniinskl*iinnk**filll*krkk---

Frame A:
kiivk*qekl*lkplmhqvllahtvkqllltikfsflvv*vlikilcnshlklmlvfkln
ll*qt*ktllkllvhqwkkllklpsy*nqwmisklltlsillssqlthqldqpllllvyq
rml**klkllqftneprvnqiissiqnyk**iisnslfyyckkekk---


Frame B:
kl**ndrkscs*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaihi*n*c*ysn*t
cfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyflps*pts*inlccclftk
ecfsrn*sycnspmnrg*ik*yhqfkiinnk**vivysiivkkkkk---


Frame C:
NYSKMTGKVVVKTTNAPGAIGPYSQAIIANNQVFVSGCLGIDKDTMQFTSETDVSIQTKL
ALTNMKNIVEAAGSSMEKVVKTTILLKSMDDFQAVNTVYSTFFPVDPPARSTFAVACLPK
NALVEIEAIAIHQ*tegksnniinskl*iinnk**filll*krkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA718 (SHA718Q) /CSM/SH/SHA7-A/SHA718Q.Seq.d/                        825   0.0
VFN414 (VFN414Q) /CSM/VF/VFN4-A/VFN414Q.Seq.d/                        823   0.0
SSC695 (SSC695Q) /CSM/SS/SSC6-D/SSC695Q.Seq.d/                        823   0.0
AFM381 (AFM381Q) /CSM/AF/AFM3-D/AFM381Q.Seq.d/                        823   0.0
VSI115 (VSI115Q) /CSM/VS/VSI1-A/VSI115Q.Seq.d/                        809   0.0
VSF418 (VSF418Q) /CSM/VS/VSF4-A/VSF418Q.Seq.d/                        803   0.0
FC-BE13 (FC-BE13Q) /CSM/FC/FC-BE/FC-BE13Q.Seq.d/                      799   0.0
VSH656 (VSH656Q) /CSM/VS/VSH6-C/VSH656Q.Seq.d/                        735   0.0
VSD732 (VSD732Q) /CSM/VS/VSD7-B/VSD732Q.Seq.d/                        605   e-172
VFK213 (VFK213Q) /CSM/VF/VFK2-A/VFK213Q.Seq.d/                         38   0.13

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   341   0.0    4
BI701710|BI701710.1 sai19b12.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-3551 5', mRNA sequence.    50   0.044  1
BX248584|BX248584.1 Blochmannia floridanus complete genome; segment 1/3.    48   0.18   1
CP000020|CP000020.1 Vibrio fischeri ES114 chromosome I, complete sequence.    46   0.69   1
BG521055|BG521055.1 ps05c09.y3 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5' similar to SW:UK14_HUMAN P52758 14.5 KD TRANSLATIONAL INHIBITOR PROTEIN ;, mRNA sequence.    34   0.79   2
AV950920|AV950920.1 Ciona intestinalis cDNA, clone:cicl05g22, 5' end, single read.    42   0.81   2
BG519938|BG519938.1 ps05c09.y2 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5' similar to SW:UK14_HUMAN P52758 14.5 KD TRANSLATIONAL INHIBITOR PROTEIN ;, mRNA sequence.    34   0.83   2
AC168870|AC168870.1 Bos taurus clone CH240-132N20, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    44   2.7    1
AR399481|AR399481.1 Sequence 3 from patent US 6620607.             44   2.7    1
AC023818|AC023818.5 Homo sapiens chromosome 16 clone CTD-2600H12, complete sequence.    44   2.7    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001072_955(CP001072|pid:none) Helicobacter pylori Shi470, comp...   132   3e-30
AP008230_1335(AP008230|pid:none) Desulfitobacterium hafniense Y5...   132   6e-30
CP000241_928(CP000241|pid:none) Helicobacter pylori HPAG1, compl...   131   1e-29
(O25598) UPF0076 protein HP_0944.  &AE000511_928(AE000511|pid:no...   130   2e-29
AM260522_1180(AM260522|pid:none) Helicobacter acinonychis str. S...   128   9e-29
AK061373_1(AK061373|pid:none) Oryza sativa Japonica Group cDNA c...   127   1e-28
CP000686_2882(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...   127   2e-28
BT039439_1(BT039439|pid:none) Zea mays full-length cDNA clone ZM...   126   3e-28
CT573071_938(CT573071|pid:none) Kuenenia stuttgartiensis genome ...   125   6e-28
DQ117525_1(DQ117525|pid:none) Cucumis sativus plastid-lipid asso...   125   6e-28

 psg: 0.74  gvh: 0.54  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHA718 is nuc

>SHA718F.Seq
AAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACCAGGTGCTA
TTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTTGTTTAG
GTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAACTAAAC
TTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAAAAGTTG
TTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTGTCTATT
CTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCAA
AGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAATCAA
ATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTCTATTAT
TGTAAAAAAGAAAAAAAAAANNNNNNNNNN