SHA714
Library SH
(Link to library)
Clone ID SHA714
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11244-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHA714 (SHA714Q) /CSM/SH/SHA7-A/SHA714Q.Seq.d/
XXXXXXXXXXTCTCAACTATGGATGATTTCATAAAGGATGCAAATATTGAAATTAAGATT
GCATTTGATCAATTTCAAGAAGCAGAAAAGAATTTCCAAGAGTTGGCAGTGTTATTTGGT
GAAGAATCTAAAATACCCTCTGAGGAATTCTTTGTTACAATCAATCGTTTCATCGTTATG
TTTGATAAATGTTATAAAGATTTCCAAAGAGATAAAGAAGCTGCTGAACGTGCAATTAAA
AGGGATGAAGCAAAAGCAAAGAAAGCTCAACAATTAAAGAGAATGAATGGTAAAATAGCC
TCAAGTACAAATAATAAAAATCCATTGGCTTCAAGTTCAACTTCTGTTGGTGATGGTGGT
ATGGTTGAAGATATCATGCAATCAGTTAGAGATGGTGATGCTTTTAAACAAAGAAGACGT
CTAAAAGGTACAAAAGAAAATACTGATGATTCTAGTTCCATCACCACTATCTCTGAACAA
TCTGAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---STMDDFIKDANIEIKIAFDQFQEAEKNFQELAVLFGEESKIPSEEFFVTINRFIVMF
DKCYKDFQRDKEAAERAIKRDEAKAKKAQQLKRMNGKIASSTNNKNPLASSSTSVGDGGM
VEDIMQSVRDGDAFKQRRRLKGTKENTDDSSSITTISEQSE


Translated Amino Acid sequence (All Frames)
Frame A:
---lnyg*fhkgcky*n*dci*sisrsrkefprvgsviw*ri*ntl*gilcynqsfhryv
**ml*rfpkr*rsc*tcn*kg*skskesstikenew*nslkyk**ksigfkfnfcw*wwy
g*ryhais*rw*cf*tkktskrykrky**f*fhhhyl*ti*


Frame B:
---STMDDFIKDANIEIKIAFDQFQEAEKNFQELAVLFGEESKIPSEEFFVTINRFIVMF
DKCYKDFQRDKEAAERAIKRDEAKAKKAQQLKRMNGKIASSTNNKNPLASSSTSVGDGGM
VEDIMQSVRDGDAFKQRRRLKGTKENTDDSSSITTISEQSE


Frame C:
---qlwmis*rmqilklrlhlinfkkqkriskswqcylvknlkyplrnsllqsivsslcl
invikiskeikkllnvqlkgmkqkqrklnn*re*mvk*pqvqiikihwlqvqlllvmvvw
lkiscnqlemvmllnkedv*kvqkkilmilvpsplslnnl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHF525 (SHF525Q) /CSM/SH/SHF5-B/SHF525Q.Seq.d/ 944 0.0
SHA714 (SHA714Q) /CSM/SH/SHA7-A/SHA714Q.Seq.d/ 944 0.0
CHF689 (CHF689Q) /CSM/CH/CHF6-D/CHF689Q.Seq.d/ 944 0.0
AHK164 (AHK164Q) /CSM/AH/AHK1-C/AHK164Q.Seq.d/ 944 0.0
AHF519 (AHF519Q) /CSM/AH/AHF5-A/AHF519Q.Seq.d/ 944 0.0
AHB896 (AHB896Q) /CSM/AH/AHB8-D/AHB896Q.Seq.d/ 944 0.0
AHB713 (AHB713Q) /CSM/AH/AHB7-A/AHB713Q.Seq.d/ 944 0.0
SFA107 (SFA107Q) /CSM/SF/SFA1-A/SFA107Q.Seq.d/ 938 0.0
VHH885 (VHH885Q) /CSM/VH/VHH8-D/VHH885Q.Seq.d/ 898 0.0
CHF806 (CHF806Q) /CSM/CH/CHF8-A/CHF806Q.Seq.d/ 890 0.0

own update 2002.10.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ812237|AJ812237.1 Dictyostelium discoideum mRNA for diaphanous-related formin dDia1 (drf1 gene). 944 0.0 1
AX320410|AX320410.1 Sequence 33 from Patent WO0168858. 50 0.042 1
AL589674|AL589674.9 Human DNA sequence from clone RP11-137J7 on chromosome 6. 50 0.042 1
AA273165|AA273165.1 SW3ICA2592SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone SW3ICA2592 5', mRNA sequence. 48 0.17 1
CK850724|CK850724.1 SWWbL3CAW25C09SK Wuchereria bancrofti L3 cDNA (SAW96MLW-WbL3) Wuchereria bancrofti cDNA clone SWWbL3CAW25C09 5', mRNA sequence. 48 0.17 1
AI065990|AI065990.1 BSBmMFSZ04O21SK Brugia malayi microfilaria cDNA (SAW94LS-BmMf) Brugia malayi cDNA clone BSBmMFSZ04O21 5', mRNA sequence. 48 0.17 1
AY330618|AY330618.1 Brugia malayi independent phosphoglycerate mutase isoform 2 (iPGM) mRNA, complete cds. 48 0.17 1
AY330617|AY330617.1 Brugia malayi independent phosphoglycerate mutase isoform 1 (iPGM) mRNA, complete cds. 48 0.17 1
BE899657|BE899657.1 SWOvL3CAN67B06SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SWOvL3CAN67B06 5', mRNA sequence. 46 0.66 1
AA629457|AA629457.1 SWOvL3CA956SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SW3ICO956 5', mRNA sequence. 46 0.66 1
dna update 2005.12.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q5TJ57) RecName: Full=Formin-E; AltName: Full=Diaphanous-relate... 66 5e-10
(Q54WH2) RecName: Full=Formin-A; 65 6e-10
AB082542_1(AB082542|pid:none) Dictyostelium discoideum forA mRNA... 65 6e-10
AB002379_1(AB002379|pid:none) Homo sapiens mRNA for KIAA0381 pro... 55 1e-06
EU831906_1(EU831906|pid:none) Synthetic construct Homo sapiens c... 54 2e-06
AL031640_2(AL031640|pid:none) Drosophila melanogaster cosmid clo... 52 9e-06
AE014298_186(AE014298|pid:none) Drosophila melanogaster chromoso... 52 9e-06
AE014298_187(AE014298|pid:none) Drosophila melanogaster chromoso... 52 9e-06
AY118439_1(AY118439|pid:none) Drosophila melanogaster RH61354 fu... 50 3e-05
AK122266_1(AK122266|pid:none) Mus musculus premature mRNA for mK... 50 3e-05
protein update 2009. 5.28
PSORT

psg: 0.75 gvh: 0.40 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SHA714 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHA714Z
3' end seq.
>SHA714Z.Seq
NNNNNNNNNNTCTCAACTATGGATGATTTCATAAAGGATGCAAATATTGAAATTAAGATT
GCATTTGATCAATTTCAAGAAGCAGAAAAGAATTTCCAAGAGTTGGCAGTGTTATTTGGT
GAAGAATCTAAAATACCCTCTGAGGAATTCTTTGTTACAATCAATCGTTTCATCGTTATG
TTTGATAAATGTTATAAAGATTTCCAAAGAGATAAAGAAGCTGCTGAACGTGCAATTAAA
AGGGATGAAGCAAAAGCAAAGAAAGCTCAACAATTAAAGAGAATGAATGGTAAAATAGCC
TCAAGTACAAATAATAAAAATCCATTGGCTTCAAGTTCAACTTCTGTTGGTGATGGTGGT
ATGGTTGAAGATATCATGCAATCAGTTAGAGATGGTGATGCTTTTAAACAAAGAAGACGT
CTAAAAGGTACAAAAGAAAATACTGATGATTCTAGTTCCATCACCACTATCTCTGAACAA
TCTGAA
Length of 3' end seq. 486
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -