SHA692
Library SH
(Link to library)
Clone ID SHA692
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11209-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHA692 (SHA692Q) /CSM/SH/SHA6-D/SHA692Q.Seq.d/
XXXXXXXXXXCAGCNCCNNTCNCNNCNCCNNNNCCNAATGTAATTCCNATTAATNCTGGT
AAAGNNAATATCNCTTTATTATCNCCNAATTCAATGTCTTCNCTTTTAAGTGATTCATTN
AATGNATCTAAANANCNNCNNCANCANCANCANCAATNTAAAACACCANCAACACCAACA
ACAACATCAACAACGACAACAACACCATCAACTACAGCAGCGGCAACAAATAAATCAGTT
TTATCAAATCCAACACCAACACCATCTCCAAATACATCATCATTCATTCCAACAAATAAA
GGATCCACAGCAACAACTACAACAACAACAGCAACACCAACACCAACACCAAGTAATAAT
ACTAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---APXXXPXPNVIPINXGKXNIXLLSPNSMSSLLSDSXNXSKXXXXXXXQXKTPXTPTT
TSTTTTTPSTTAAATNKSVLSNPTPTPSPNTSSFIPTNKGSTATTTTTTATPTPTPSNNT


Translated Amino Acid sequence (All Frames)
Frame A:
---sxxxxxxxxcnsx*xw*xxyxfiixxfnvfxfk*fixxi*xxxxxxxxx*ntxntnn
ninndnntinyssgnk*isfiksntntiskyiiihsnk*rihsnnynnnsntntntk**y
*


Frame B:
---APXXXPXPNVIPINXGKXNIXLLSPNSMSSLLSDSXNXSKXXXXXXXQXKTPXTPTT
TSTTTTTPSTTAAATNKSVLSNPTPTPSPNTSSFIPTNKGSTATTTTTTATPTPTPSNNT


Frame C:
---xxsxxxxxm*fxlxlvkxislyyxxiqclxf*vihxmxlxxxxxxxxnxkhxqhqqq
hqqrqqhhqlqqrqqinqfyqiqhqhhlqihhhsfqqikdpqqqlqqqqqhqhqhqviil


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK678 (SHK678Q) /CSM/SH/SHK6-D/SHK678Q.Seq.d/ 151 9e-36
SHJ726 (SHJ726Q) /CSM/SH/SHJ7-B/SHJ726Q.Seq.d/ 151 9e-36
SHF294 (SHF294Q) /CSM/SH/SHF2-D/SHF294Q.Seq.d/ 151 9e-36
SHD404 (SHD404Q) /CSM/SH/SHD4-A/SHD404Q.Seq.d/ 151 9e-36
SHC366 (SHC366Q) /CSM/SH/SHC3-C/SHC366Q.Seq.d/ 151 9e-36
SHA692 (SHA692Q) /CSM/SH/SHA6-D/SHA692Q.Seq.d/ 151 9e-36
SHA459 (SHA459Q) /CSM/SH/SHA4-C/SHA459Q.Seq.d/ 151 9e-36
SHA402 (SHA402Q) /CSM/SH/SHA4-A/SHA402Q.Seq.d/ 151 9e-36
SFF611 (SFF611Q) /CSM/SF/SFF6-A/SFF611Q.Seq.d/ 151 9e-36
AHQ115 (AHQ115Q) /CSM/AH/AHQ1-A/AHQ115Q.Seq.d/ 151 9e-36

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

T01830|T01830.1 wEST02551 Early embryo, Stratagene (cat. #937007) Caenorhabditiselegans cDNA clone CEESW20, mRNA sequence. 48 0.12 1
C64482|C64482.1 C.elegans cDNA clone yk359d5 : 5' end, single read. 48 0.12 1
C61142|C61142.1 C.elegans cDNA clone yk224g2 : 5' end, single read. 48 0.12 1
Z67884|Z67884.1 Caenorhabditis elegans Cosmid T14G8. 48 0.12 1
AC016723|AC016723.11 Homo sapiens BAC clone RP11-334N15 from 2, complete sequence. 32 0.27 2
D36293|D36293.2 Caenorhabditis elegans cDNA clone yk31b3 : 5' end, single read. 44 1.9 1
AY429683|AY429683.1 Dictyostelium discoideum dusty protein kinase gene, complete cds. 44 1.9 1
AY429682|AY429682.1 Dictyostelium discoideum dusty protein kinase mRNA, complete cds. 44 1.9 1
DT603086|DT603086.1 wmi03-5ms2-h07 Wmi03 Welwitschia mirabilis cDNA clone wmi03-5ms2-h07 5', mRNA sequence. 32 4.8 2
BM522048|BM522048.1 ESSU0585 S.scabiei cDNA library Sarcoptes scabiei cDNA clone SAS0712 5', mRNA sequence. 30 4.8 2
dna update 2005.12.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55GH4) RecName: Full=Glycogen [starch] synthase; EC=2... 32 6.7

protein update 2009. 5.28
PSORT

psg: 0.79 gvh: 0.46 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SHA692 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHA692Z
3' end seq.
>SHA692Z.Seq
NNNNNNNNNNCAGCNCCNNTCNCNNCNCCNNNNCCNAATGTAATTCCNATTAATNCTGGT
AAAGNNAATATCNCTTTATTATCNCCNAATTCAATGTCTTCNCTTTTAAGTGATTCATTN
AATGNATCTAAANANCNNCNNCANCANCANCANCAATNTAAAACACCANCAACACCAACA
ACAACATCAACAACGACAACAACACCATCAACTACAGCAGCGGCAACAAATAAATCAGTT
TTATCAAATCCAACACCAACACCATCTCCAAATACATCATCATTCATTCCAACAAATAAA
GGATCCACAGCAACAACTACAACAACAACAGCAACACCAACACCAACACCAAGTAATAAT
ACTAA
Length of 3' end seq. 365
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -