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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA686
Library SH
(Link to library)
Clone ID SHA686
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHA686P
(Link to Original site)
Representative DNA sequence 
>SHA686 (SHA686Q) /CSM/SH/SHA6-D/SHA686Q.Seq.d/
ACATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTT
ATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGA
AAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTT
AAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTT
TGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTT
TTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCAC
ATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAA
AATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTG
TGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGG
AGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAA
CCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCAXXXXXXX
XXXTGATCAAACTGCTTTAATCACTATATATGGTACATCATTTGGTGATGCAAATCTTGA
AATTCTAATCGATGGTAAACCATGTACACAACCCTGAAATCAACATTCACACTTATTCTA
GTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTA
AATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTA
AATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGT
ATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACAC
AGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATC
TACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTT
ATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTA
GACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATT
CAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCA
AATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCT
ATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAGATAAATAAATAAA
AAAAAAGCAAATAATTACTCAATTATTTTTTAAATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
h*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILL
NPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFT
YNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTG
DIPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVENL---

---DQTALITIYGTSFGDANLEILIDGKPCTQP*nqhshlf*fnl*cnql**naki*llq
y*iqyqylc*wsilycsnfpi*i*inn*l**k*virisk*nvyryccnynifsinflcy*
ntg*kiy*reksqksi*is**sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkei
i*tpth*mlfqrty*lntiskfksnniqf*ikpkpnspiynqiinlylvivfvlvsshlq
ylstifffyf*yi*nk*dk*ikkkqiitqlffkf
Translated Amino Acid sequence (All Frames) 
Frame A:
tltrn**lvkneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ssyfhsf
ksk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrrir*fh
i*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*cfisnw
rytk*tnnr*prkyyhsrk*plqhpn*n*fk*sr*kp---

---*sncfnhyiwyiiw*cks*nsnrw*tmyttlkstftlilv*pvm*ptmmkc*nittp
ilnsisvsllmvntlllkfsnlnmnqqlvivkishqdfqmkcisvllql*yf*h*fslll
khrlknilkreepekhldqliiyvlnfvrnmllkslniihlvmkalqnqikvismi*ern
yldshsldvvsknilikyyfqiqiq*ypiln*t*tkftnl*snnqfiscncfcsciisss
isiynfflllliylkqir*inkkkannysiif*i

Frame B:
h*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILL
NPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFT
YNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTG
DIPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVENL---

---DQTALITIYGTSFGDANLEILIDGKPCTQP*nqhshlf*fnl*cnql**naki*llq
y*iqyqylc*wsilycsnfpi*i*inn*l**k*virisk*nvyryccnynifsinflcy*
ntg*kiy*reksqksi*is**sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkei
i*tpth*mlfqrty*lntiskfksnniqf*ikpkpnspiynqiinlylvivfvlvsshlq
ylstifffyf*yi*nk*dk*ikkkqiitqlffkf

Frame C:
idpqlviske*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmiklfpff*
iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*edplish
itilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fimlhikle
iyqinqqsmtkeilpfkevtfttpklkliqmiplkts---

---ikll*slymvhhlvmqilkf*smvnhvhnpeinihtyssltcnvtnydemlkynysn
tkfnisisvdgqyfiaqifqfkyestisysenkssgfpnemyigivaiiiflaliffaik
tqvekyieerrarkafrsvdnlrlklrekhaaeiakhysfgyesapkpnksyfydlgkkl
srlplirccfkehtd*ilfpnsnpiisnsklnlnqihqsiik*siyil*lflflyhlifn
iylqffsftsnifktnkink*kksk*llnyfln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA686 (SHA686Q) /CSM/SH/SHA6-D/SHA686Q.Seq.d/                       2599   0.0
CHF618 (CHF618Q) /CSM/CH/CHF6-A/CHF618Q.Seq.d/                       1461   0.0
AHM163 (AHM163Q) /CSM/AH/AHM1-C/AHM163Q.Seq.d/                       1461   0.0
CHI128 (CHI128Q) /CSM/CH/CHI1-B/CHI128Q.Seq.d/                       1459   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1455   0.0
AHH644 (AHH644Q) /CSM/AH/AHH6-B/AHH644Q.Seq.d/                       1453   0.0
SHG893 (SHG893Q) /CSM/SH/SHG8-D/SHG893Q.Seq.d/                       1447   0.0
SHD403 (SHD403Q) /CSM/SH/SHD4-A/SHD403Q.Seq.d/                       1447   0.0
SHJ822 (SHJ822Q) /CSM/SH/SHJ8-A/SHJ822Q.Seq.d/                       1437   0.0
SHB484 (SHB484Q) /CSM/SH/SHB4-D/SHB484Q.Seq.d/                       1431   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   216   e-119  15
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        38   0.005  19
AL139075|AL139075.2 Campylobacter jejuni NCTC11168 complete genome; segment 2/6.    34   0.023  14
AX345887|AX345887.1 Sequence 958 from Patent WO0200928.            34   0.064  6
AC114778|AC114778.5 Homo sapiens chromosome 2 clone RP11-516O5, complete sequence.    34   0.087  8
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.099  2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.099  2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.099  2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.099  2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.100  2
dna update 2005.12.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   398   e-109
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   397   e-109
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   397   e-109
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   397   e-109
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   258   6e-80
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   258   6e-80
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   258   8e-80
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   258   8e-80
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   257   1e-79
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   256   3e-79
protein update 2009. 4.15
PSORT 

 psg: 1.01  gvh: 0.44  alm: 0.31  top: 0.23  tms: 0.07  mit: 0.40  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHA686 is end
5' end seq. ID SHA686F
5' end seq. 
>SHA686F.Seq
ACATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTT
ATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGA
AAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTT
AAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTT
TGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTT
TTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCAC
ATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAA
AATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTG
TGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGG
AGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAA
CCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCANNNNNNN
NNN
Length of 5' end seq. 663
3' end seq. ID SHA686Z
3' end seq. 
>SHA686Z.Seq
NNNNNNNNNNTGATCAAACTGCTTTAATCACTATATATGGTACATCATTTGGTGATGCAA
ATCTTGAAATTCTAATCGATGGTAAACCATGTACACAACCCTGAAATCAACATTCACACT
TATTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCC
AATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTC
CAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAAT
GAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATT
AAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTT
GATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCA
TTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAA
TTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTT
CCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCT
ATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTC
AATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAGATAAAT
AAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTTAAATTT
Length of 3' end seq. 824
Connected seq. ID SHA686P
Connected seq. 
>SHA686P.Seq
ACATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTT
ATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGA
AAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTT
AAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTT
TGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTT
TTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCAC
ATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAA
AATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTG
TGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGG
AGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAA
CCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCA-------
---TGATCAAACTGCTTTAATCACTATATATGGTACATCATTTGGTGATGCAAATCTTGA
AATTCTAATCGATGGTAAACCATGTACACAACCCTGAAATCAACATTCACACTTATTCTA
GTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTA
AATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTA
AATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGT
ATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACAC
AGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATC
TACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTT
ATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTA
GACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATT
CAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCA
AATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCT
ATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAGATAAATAAATAAA
AAAAAAGCAAATAATTACTCAATTATTTTTTAAATTT
Length of connected seq. 1467
Full length Seq ID -
Full length Seq. -
Length of full length seq. -