SHA655
Library SH
(Link to library)
Clone ID SHA655
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHA655P
(Link to Original site)
Representative DNA sequence
>SHA655 (SHA655Q) /CSM/SH/SHA6-C/SHA655Q.Seq.d/
AATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCATTAAAAAATG
AAATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAA
ACAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACA
GATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGCAATGAAGTT
CATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTTTCCTTTATT
CTTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGATGCTTCAACT
ATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGG
TGCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGAGTAAAATTA
AATTACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTAT
TAAACAAAAGTTTTTATXXXXXXXXXXAATCAAATTAAAATTAAAATTCAATTATAAACA
ACAAATTAAAAACTCCATTAAAAAATGAAATTGTTATTTGTTTTATTATCTCTTCTTTTA
ATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAAACCCATGGTGAC
CATAATGATTTTATTTTCAAATTAACAGATTCCAAAAAAATTCAAATGGCCAGAGATATT
TTGTCTGGAAAGGAAAGCAATGAAGTTCATGTAATGGGTAGAATTAAAAAGAGACCTGAA
AGCTATAATCCAAAGTTTTCCTTTATTCTTGACCCAGATACAATCACATTTTTTGCCATG
GCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCTGT
GGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAATTAACAAGAGAAATT
AAAGTTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTAATCAAATTAAAT
ACTTAAATATTTAATAATAAAGTTTATTAAACAAAAG
sequence update 2002.10.25
Translated Amino Acid sequence
iklklkfnykqqiknsikk*ncylfyylff*yfqywynlkqpilv*kpmvtimilfsn*q
ipkkfkwpeifclerkamkfm*wvelkrdlkaiiqsfplfltqiqshflpwllkfvmlql
fm*kitlmrpvvlssqvasgahglqn*qeklkfkl*e*n*ithd*i*sn*ILKYLIIKFI
KQKFL---

---IKLKLKFNYKQQIKNSIKK*ncylfyylff*yfqywynlkqpilv*kpmvtimilfs
n*qipkkfkwpeifclerkamkfm*wvelkrdlkaiiqsfplfltqiqshflpwllkfvm
lqlfm*kitlmrpvvlssqvasgahglqn*qeklkfkl*e*n*ithd*i*sn*ilkylii
kfikqk


Translated Amino Acid sequence (All Frames)
Frame A:
nqikikiql*ttn*klh*kmkllfvllslllifsvlvqsetayfglkthgdhndfifklt
dskkiqmardilsgkesnevhvmgrikkrpesynpkfsfildpdtitffamaievcdast
iyvedhldeacgaflpgcfwcpwsskltreikv*tirvklnys*lnliklnt*ifnnkvy
*tkvf---

---nqikikiql*ttn*klh*kmkllfvllslllifsvlvqsetayfglkthgdhndfif
kltdskkiqmardilsgkesnevhvmgrikkrpesynpkfsfildpdtitffamaievcd
astiyvedhldeacgaflpgcfwcpwsskltreikv*tirvklnys*lnliklnt*ifnn
kvy*tk

Frame B:
iklklkfnykqqiknsikk*ncylfyylff*yfqywynlkqpilv*kpmvtimilfsn*q
ipkkfkwpeifclerkamkfm*wvelkrdlkaiiqsfplfltqiqshflpwllkfvmlql
fm*kitlmrpvvlssqvasgahglqn*qeklkfkl*e*n*ithd*i*sn*ILKYLIIKFI
KQKFL---

---IKLKLKFNYKQQIKNSIKK*ncylfyylff*yfqywynlkqpilv*kpmvtimilfs
n*qipkkfkwpeifclerkamkfm*wvelkrdlkaiiqsfplfltqiqshflpwllkfvm
lqlfm*kitlmrpvvlssqvasgahglqn*qeklkfkl*e*n*ithd*i*sn*ilkylii
kfikqk

Frame C:
sn*n*nsiinnklktplkneivicfiissfnifsigti*nslfwfknpw*p**fyfqinr
fqknsngqryfvwkgkq*sscng*n*ket*kl*skvflys*prynhifchgy*sl*cfny
lcrrsp**glwcfpprlllvpmvfkinkrn*slnykskikllmikfnqikylni***sll
nksfy---

---sn*n*nsiinnklktplkneivicfiissfnifsigti*nslfwfknpw*p**fyfq
inrfqknsngqryfvwkgkq*sscng*n*ket*kl*skvflys*prynhifchgy*sl*c
fnylcrrsp**glwcfpprlllvpmvfkinkrn*slnykskikllmikfnqikylni***
sllnk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM185 (SSM185Q) /CSM/SS/SSM1-D/SSM185Q.Seq.d/ 805 0.0
SSM130 (SSM130Q) /CSM/SS/SSM1-B/SSM130Q.Seq.d/ 805 0.0
SSK794 (SSK794Q) /CSM/SS/SSK7-D/SSK794Q.Seq.d/ 805 0.0
SSK457 (SSK457Q) /CSM/SS/SSK4-C/SSK457Q.Seq.d/ 805 0.0
SSK206 (SSK206Q) /CSM/SS/SSK2-A/SSK206Q.Seq.d/ 805 0.0
SSJ696 (SSJ696Q) /CSM/SS/SSJ6-D/SSJ696Q.Seq.d/ 805 0.0
SSJ576 (SSJ576Q) /CSM/SS/SSJ5-D/SSJ576Q.Seq.d/ 805 0.0
SSI717 (SSI717Q) /CSM/SS/SSI7-A/SSI717Q.Seq.d/ 805 0.0
SSI296 (SSI296Q) /CSM/SS/SSI2-D/SSI296Q.Seq.d/ 805 0.0
SSH879 (SSH879Q) /CSM/SS/SSH8-D/SSH879Q.Seq.d/ 805 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds. 591 0.0 2
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 149 1e-86 9
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 56 0.002 1
CR382377|CR382377.10 Zebrafish DNA sequence from clone DKEY-238I13 in linkage group 17. 42 0.004 3
AL138652|AL138652.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T18B22. 38 0.21 6
AC005505|AC005505.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces. 38 0.53 9
AY191644|AY191644.1 Allocasuarina crassa specimen-voucher DAS99001 U.Tas maturase K (matK) gene, partial cds; chloroplast gene for chloroplast product. 36 0.68 2
AF402141|AF402141.1 Schizophyllum commune mitochondrial DNA, complete genome. 38 1.4 4
AL033510|AL033510.1 Caenorhabditis elegans YAC Y40H7A. 46 1.4 3
BX537310|BX537310.7 Zebrafish DNA sequence from clone CH211-138N17 in linkage group 3. 38 1.5 8
dna update 2005.12.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ... 245 2e-63
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 142 2e-32
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 131 5e-29
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom... 46 0.002

protein update 2008.11.12
PSORT

psg: 0.57 gvh: 0.17 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.00
nuc: 0.24 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for SHA655 is nuc

5' end seq. ID SHA655F
5' end seq.
>SHA655F.Seq
AATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCATTAAAAAATG
AAATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAA
ACAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACA
GATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGCAATGAAGTT
CATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTTTCCTTTATT
CTTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGATGCTTCAACT
ATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGG
TGCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGAGTAAAATTA
AATTACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTAT
TAAACAAAAGTTTTTATNNNNNNNNNN
Length of 5' end seq. 567
3' end seq. ID SHA655Z
3' end seq.
>SHA655Z.Seq
NNNNNNNNNNAATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCA
TTAAAAAATGAAATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGT
ACAATCTGAAACAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTT
CAAATTAACAGATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAG
CAATGAAGTTCATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTT
TTCCTTTATTCTTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGA
TGCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGG
TTGCTTCTGGTGCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAG
AGTAAAATTAAATTACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAA
TAAAGTTTATTAAACAAAAG
Length of 3' end seq. 560
Connected seq. ID SHA655P
Connected seq.
>SHA655P.Seq
AATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCATTAAAAAATG
AAATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAA
ACAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACA
GATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGCAATGAAGTT
CATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTTTCCTTTATT
CTTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGATGCTTCAACT
ATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGG
TGCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGAGTAAAATTA
AATTACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTAT
TAAACAAAAGTTTTTAT----------AATCAAATTAAAATTAAAATTCAATTATAAACA
ACAAATTAAAAACTCCATTAAAAAATGAAATTGTTATTTGTTTTATTATCTCTTCTTTTA
ATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAAACCCATGGTGAC
CATAATGATTTTATTTTCAAATTAACAGATTCCAAAAAAATTCAAATGGCCAGAGATATT
TTGTCTGGAAAGGAAAGCAATGAAGTTCATGTAATGGGTAGAATTAAAAAGAGACCTGAA
AGCTATAATCCAAAGTTTTCCTTTATTCTTGACCCAGATACAATCACATTTTTTGCCATG
GCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCTGT
GGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAATTAACAAGAGAAATT
AAAGTTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTAATCAAATTAAAT
ACTTAAATATTTAATAATAAAGTTTATTAAACAAAAG
Length of connected seq. 1107
Full length Seq ID -
Full length Seq. -
Length of full length seq. -