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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA641
Library SH
(Link to library)
Clone ID SHA641
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15732-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHA641 (SHA641Q) /CSM/SH/SHA6-B/SHA641Q.Seq.d/
TTAGAGAACATATTGAAAAAATTTTAAAAACCCCGANGGGTGAAAAGAAAGATGTTNCAA
GTTTATTATCATCATATCATCCAACAGCAGTNGAATCAATTTGGTNTGATTATTGGTTAN
ATANNGGATATTTTTCACCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
REHIEKILKTPXGEKKDVXSLLSSYHPTAVESIWXDYWLXXGYFS---
Translated Amino Acid sequence (All Frames) 
Frame A:
lenilkkf*kprxvkrkmxqvyyhhiiqqqxnqfgxiigxixdifh---


Frame B:
*rty*knfknpxg*kercxkfiiiissnssxinlv*llvxxxiff---


Frame C:
REHIEKILKTPXGEKKDVXSLLSSYHPTAVESIWXDYWLXXGYFS---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA641 (SHA641Q) /CSM/SH/SHA6-B/SHA641Q.Seq.d/                        234   3e-61
VHP768 (VHP768Q) /CSM/VH/VHP7-C/VHP768Q.Seq.d/                        226   7e-59
VHP692 (VHP692Q) /CSM/VH/VHP6-D/VHP692Q.Seq.d/                        226   7e-59
VHN702 (VHN702Q) /CSM/VH/VHN7-A/VHN702Q.Seq.d/                        226   7e-59
VHM840 (VHM840Q) /CSM/VH/VHM8-B/VHM840Q.Seq.d/                        226   7e-59
VHL788 (VHL788Q) /CSM/VH/VHL7-D/VHL788Q.Seq.d/                        226   7e-59
VHL460 (VHL460Q) /CSM/VH/VHL4-C/VHL460Q.Seq.d/                        226   7e-59
VHL308 (VHL308Q) /CSM/VH/VHL3-A/VHL308Q.Seq.d/                        226   7e-59
VHJ511 (VHJ511Q) /CSM/VH/VHJ5-A/VHJ511Q.Seq.d/                        226   7e-59
VHJ111 (VHJ111Q) /CSM/VH/VHJ1-A/VHJ111Q.Seq.d/                        226   7e-59
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   149   1e-49  2
AC155863|AC155863.2 Bos taurus clone CH240-40L9, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    46   0.18   1
CK810874|CK810874.1 Rasgsc6152 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    44   0.73   1
BM800335|BM800335.1 AGENCOURT_6416082 NIH_MGC_71 Homo sapiens cDNA clone IMAGE:5531387 5', mRNA sequence.    44   0.73   1
DR791708|DR791708.1 ZM_BFb0011E19.f ZM_BFb Zea mays cDNA 3', mRNA sequence.    42   2.9    1
AW544606|AW544606.1 C0183G01-3 Mouse E7.5 Extraembryonic Portion cDNA Library Mus musculus cDNA clone C0183G01 3', mRNA sequence.    42   2.9    1
BU682984|BU682984.1 UI-CF-EC1-acl-i-11-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone UI-CF-EC1-acl-i-11-0-UI 3', mRNA sequence.    42   2.9    1
AC084260|AC084260.3 Homo sapiens chromosome 8 clone RP1-96P7 map 8, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42   2.9    1
AC017059|AC017059.3 Homo sapiens chromosome 15 clone RP11-345N23, WORKING DRAFT SEQUENCE, 22 unordered pieces.    42   2.9    1
AC117136|AC117136.4 Rattus norvegicus clone CH230-22I10, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42   2.9    1
dna update 2005.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KU2) RecName: Full=Probable valyl-tRNA synthetase, cytoplasm...    89   3e-17
(O75005) RecName: Full=Valyl-tRNA synthetase;          EC=6.1.1....    45   6e-04
CR954203_287(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    44   0.002
(P28350) RecName: Full=Valyl-tRNA synthetase, mitochondrial;    ...    42   0.005
AF506219_1(AF506219|pid:none) Danio rerio valyl-tRNA synthetase ...    42   0.005
(P49696) RecName: Full=Valyl-tRNA synthetase;          EC=6.1.1....    42   0.006
AE016814_220(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    42   0.006
(P07806) RecName: Full=Valyl-tRNA synthetase, mitochondrial;    ...    42   0.008
J02719_1(J02719|pid:none) Yeast (S.cerevisiae) VASI gene encodin...    41   0.011
AF109906_13(AF109906|pid:none) Mus musculus MHC class III region...    41   0.011
protein update 2009. 4.15
PSORT 

 psg: 0.41  gvh: 0.48  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SHA641 is nuc
5' end seq. ID SHA641F
5' end seq. 
>SHA641F.Seq
TTAGAGAACATATTGAAAAAATTTTAAAAACCCCGANGGGTGAAAAGAAAGATGTTNCAA
GTTTATTATCATCATATCATCCAACAGCAGTNGAATCAATTTGGTNTGATTATTGGTTAN
ATANNGGATATTTTTCACCNNNNNNNNNN
Length of 5' end seq. 149
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -