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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA589
Library SH
(Link to library)
Clone ID SHA589
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHA589P
(Link to Original site)
Representative DNA sequence 
>SHA589 (SHA589Q) /CSM/SH/SHA5-D/SHA589Q.Seq.d/
ATATTATTATTTTTTTCATCAATAAATTAATATTTCTTTGTATTTCTTTTTATATTATTC
ATTAAAAAAAAAAAAAATAAAAAAAAAACCAAANTAAAAAAAAAXXXXXXXXXXGAAAAG
GTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAGATGGGCT
CGTGTTTTAACCGCTATTAAANAAGATACTTTTGGTCCACATGAACAATTCCAAGATATT
ATCAACTNTGTTAGTGGTGGCAATGATCATTACATTNTTAGTTATGATTTTGGTTNTTAC
TTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAA
TCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTAT
GCTCAACAAATTTGGGGTATTGAAGAATGGAANAGACCAGGTCCAGTTCCAGTTTCAAAT
GAANAAGCTCGTTNTTTATTAGTTCCACCACCATNTGGTTCACCAAATGATATCAATGCT
ATNTCAATTGAAAGATTATCNCCTTTAACTTTTGTTAAACAAACTTNTGCTTNTCCATTA
TCTGTTATCTCTGGTGGTGATAAAACCAACAACNCTTTAAAACCAAAACAAACTACAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
illffssin*YFFVFLFILFIKKKKNKKKTKXKK---

---EKVNKVKKIIHDGKFTPDTRWARVLTAIKXDTFGPHEQFQDIINXVSGGNDHYIXSY
DFGXYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWXRPGP
VPVSNEXARXLLVPPPXGSPNDINAXSIERLSPLTFVKQTXAXPLSVISGGDKTNNXLKP
KQTT
Translated Amino Acid sequence (All Frames) 
Frame A:
illffssin*YFFVFLFILFIKKKKNKKKTKXKK---

---EKVNKVKKIIHDGKFTPDTRWARVLTAIKXDTFGPHEQFQDIINXVSGGNDHYIXSY
DFGXYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWXRPGP
VPVSNEXARXLLVPPPXGSPNDINAXSIERLSPLTFVKQTXAXPLSVISGGDKTNNXLKP
KQTT

Frame B:
yyyffhq*inislyfflyyslkkkkikkkpx*kk---

---krstk*rklfmmenshqtldglvf*pllxkillvhmnnskilstxlvvamiitxlvm
ilvxtwifkiqlikiskielnglknqlwlqfvvvnsvqieplksmlnkfgvlkngxdqvq
fqfqmxklvxy*fhhhxvhqmismlxqlkdyxl*lllnklxlxhyllslvvikpttl*nq
nklq

Frame C:
iiiffinkliflcisfyiih*kkkk*kknqxkkk---

---kgqqskenys*wkihtrh*mgscfnry*xryfwst*tipryyqlc*wwq*slhx*l*
fwxllgyskfn*srfqr*s*mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmextrss
ssfk*xssxfissttxwftk*yqcyxn*kiixfnfc*tnxcxsiicylww**nqqxfktk
tnyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA589 (SHA589Q) /CSM/SH/SHA5-D/SHA589Q.Seq.d/                       1003   0.0
SSA564 (SSA564Q) /CSM/SS/SSA5-C/SSA564Q.Seq.d/                        995   0.0
SHL702 (SHL702Q) /CSM/SH/SHL7-A/SHL702Q.Seq.d/                        995   0.0
SHL445 (SHL445Q) /CSM/SH/SHL4-B/SHL445Q.Seq.d/                        995   0.0
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/                        995   0.0
SHK334 (SHK334Q) /CSM/SH/SHK3-B/SHK334Q.Seq.d/                        995   0.0
SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/                        995   0.0
SHK175 (SHK175Q) /CSM/SH/SHK1-D/SHK175Q.Seq.d/                        995   0.0
SHJ645 (SHJ645Q) /CSM/SH/SHJ6-B/SHJ645Q.Seq.d/                        995   0.0
SHH157 (SHH157Q) /CSM/SH/SHH1-C/SHH157Q.Seq.d/                        995   0.0
own update 2002.10.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.   995   0.0    1
AC149134|AC149134.2 Medicago truncatula, complete sequence.        40   0.020  4
AC156821|AC156821.2 Bos taurus clone CH240-60M1, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    40   0.45   2
AQ268300|AQ268300.1 RPCI11-73P16.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-73P16, genomic survey sequence.    46   0.92   1
AP004029|AP004029.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_D07, WORKING DRAFT SEQUENCE, 1 ordered pieces.    40   2.0    3
AP005629|AP005629.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0004A19, WORKING DRAFT SEQUENCE, 1 ordered pieces.    40   2.7    3
AP000366|AP000366.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03.    40   3.6    3
AF506028|AF506028.1 Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence.    42   4.5    4
dna update 2005.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...    94   4e-18
CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    89   1e-16
CP000584_198(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    88   2e-16
AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos...    88   2e-16
DQ279079_1(DQ279079|pid:none) Chlamydomonas reinhardtii PhoA (PH...    87   5e-16
(Q9SD76) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...    84   3e-15
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c...    84   5e-15
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos...    84   5e-15
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou...    84   5e-15
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...    83   8e-15
protein update 2009. 4.14
PSORT 

 psg: 1.03  gvh: 0.34  alm: 0.49  top: 1.13  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for SHA589 is mit
5' end seq. ID SHA589F
5' end seq. 
>SHA589F.Seq
ATATTATTATTTTTTTCATCAATAAATTAATATTTCTTTGTATTTCTTTTTATATTATTC
ATTAAAAAAAAAAAAAATAAAAAAAAAACCAAANTAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 114
3' end seq. ID SHA589Z
3' end seq. 
>SHA589Z.Seq
NNNNNNNNNNGAAAAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACC
AGACACTAGATGGGCTCGTGTTTTAACCGCTATTAAANAAGATACTTTTGGTCCACATGA
ACAATTCCAAGATATTATCAACTNTGTTAGTGGTGGCAATGATCATTACATTNTTAGTTA
TGATTTTGGTTNTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGC
TAAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAG
AACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAANAGACCAGGTCC
AGTTCCAGTTTCAAATGAANAAGCTCGTTNTTTATTAGTTCCACCACCATNTGGTTCACC
AAATGATATCAATGCTATNTCAATTGAAAGATTATCNCCTTTAACTTTTGTTAAACAAAC
TTNTGCTTNTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACNCTTTAAAACC
AAAACAAACTACAAA
Length of 3' end seq. 555
Connected seq. ID SHA589P
Connected seq. 
>SHA589P.Seq
ATATTATTATTTTTTTCATCAATAAATTAATATTTCTTTGTATTTCTTTTTATATTATTC
ATTAAAAAAAAAAAAAATAAAAAAAAAACCAAANTAAAAAAAAA----------GAAAAG
GTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAGATGGGCT
CGTGTTTTAACCGCTATTAAANAAGATACTTTTGGTCCACATGAACAATTCCAAGATATT
ATCAACTNTGTTAGTGGTGGCAATGATCATTACATTNTTAGTTATGATTTTGGTTNTTAC
TTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAA
TCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTAT
GCTCAACAAATTTGGGGTATTGAAGAATGGAANAGACCAGGTCCAGTTCCAGTTTCAAAT
GAANAAGCTCGTTNTTTATTAGTTCCACCACCATNTGGTTCACCAAATGATATCAATGCT
ATNTCAATTGAAAGATTATCNCCTTTAACTTTTGTTAAACAAACTTNTGCTTNTCCATTA
TCTGTTATCTCTGGTGGTGATAAAACCAACAACNCTTTAAAACCAAAACAAACTACAAA
Length of connected seq. 649
Full length Seq ID -
Full length Seq. -
Length of full length seq. -