>SHA585 (SHA585Q) /CSM/SH/SHA5-D/SHA585Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCT
CCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCT
GAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATT
GTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAA
CAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCC
CAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAA
ATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAAT
TTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAA
GCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGA
CAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGAT
GTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAAT
CAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTA
AAAAATATTCAACAGAACAACAAAATCAAAAATAATTTAATCATTCTTNCTTTTAAAAAA
CTA

iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSH
KIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQ
NEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEF
QRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKN
QLKNIQQNNKIKNNLIILXFKKL

Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---nklkll*rmkdfifkklkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tl
irl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllny
kmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklskn
fkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklk
in*kifnrttkskii*sfxllkn

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---ts*ncfre*ktlssrs*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls
*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*it
k*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqri
sktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*k
sikkysteqqnqk*fnhsxf*kt

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSH
KIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQ
NEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEF
QRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKN
QLKNIQQNNKIKNNLIILXFKKL

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/                        882   0.0
SHB168 (SHB168Q) /CSM/SH/SHB1-C/SHB168Q.Seq.d/                        882   0.0
SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/                        882   0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/                        882   0.0
SHA585 (SHA585Q) /CSM/SH/SHA5-D/SHA585Q.Seq.d/                        882   0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/                        882   0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/                        882   0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/                        882   0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/                        882   0.0
CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/                        882   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   882   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AL356122|AL356122.9 Human DNA sequence from clone RP11-61P22 on chromosome 6.    40   0.092  6
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.32   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.32   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.32   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.32   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.32   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.32   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.32   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   317   4e-85
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    39   0.23
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    39   0.23
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    39   0.23
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    39   0.30
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.39
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    38   0.51
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.66
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.86
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.86

 psg: 0.56  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHA585 is nuc

>SHA585F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N

>SHA585Z.Seq
NNNNNNNNNNAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTT
GAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTT
CAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCT
CATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGAT
GCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTAT
GAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTA
CAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCA
AATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAA
CAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAA
TTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTAC
TTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAA
CAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAA
AATCAATTAAAAAATATTCAACAGAACAACAAAATCAAAAATAATTTAATCATTCTTNCT
TTTAAAAAACTA

>SHA585P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-AACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCT
CCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCT
GAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATT
GTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAA
CAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCC
CAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAA
ATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAAT
TTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAA
GCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGA
CAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGAT
GTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAAT
CAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTA
AAAAATATTCAACAGAACAACAAAATCAAAAATAATTTAATCATTCTTNCTTTTAAAAAA
CTA