SHA573
Library SH
(Link to library)
Clone ID SHA573
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHA573P
(Link to Original site)
Representative DNA sequence
>SHA573 (SHA573Q) /CSM/SH/SHA5-D/SHA573Q.Seq.d/
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXXX
XXXXXXAACCAAGACTGTCANCGGTAAGACCACCNNTCAATCATNATCAAGNTCATCATC
ATCCATCTGTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGNTGATGTTGCTGG
TAACCTCAATGTCGTTGCCTCANAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATT
CAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTC
AAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGC
TGCTATGGCTGCTGCCTNTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATG
TGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAAT
AATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTA
ACTTTTTAAACACACCCTTTTCAATTTTAAAACAATACAAA
sequence update 2002.10.25
Translated Amino Acid sequence
iqstnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---TKTVXGKTTXQSXSXSSSSICKQFVPMIVCSGTXDVAGNLNVVASXANQAKIASGTV
FKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAAXKVWSIVNSPCNCE
CGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfktiq


Translated Amino Acid sequence (All Frames)
Frame A:
iqstnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---nqdcxr*dhxsixikxiiihl*tirsndrlfryx*ccw*pqcrclxsqss*nclwyc
iqihlspsc*r*clls*lshlkhccccstscrccccccpkscygccl*slvnckftm*l*
mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thpfqf*nnt

Frame B:
fnqqtknnnlkkq*fivk*kqlknh*lffspphykfqyffln*fpaflffytittnpisl
lptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---TKTVXGKTTXQSXSXSSSSICKQFVPMIVCSGTXDVAGNLNVVASXANQAKIASGTV
FKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAAXKVWSIVNSPCNCE
CGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfktiq

Frame C:
sinkqktti*knnnl**sknn*ritncffllltinsniff*infqlfcfftqsqptlyhy
yqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---prlsxvrppxnhxqxhhhpsvnnsfq*sfvqvlxmllvtsmslpxkpiklklplvly
snssqpqllkvmspqlavspqalllllnklpvlllllpkkllwllpxkfgql*ihhvtvn
vd*rdykliqlllsndnklk*ynsflfffiltnvfvn*linflntpfsilkqyk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB103 (SHB103Q) /CSM/SH/SHB1-A/SHB103Q.Seq.d/ 432 e-120
SHA573 (SHA573Q) /CSM/SH/SHA5-D/SHA573Q.Seq.d/ 432 e-120
SLH621 (SLH621Q) /CSM/SL/SLH6-A/SLH621Q.Seq.d/ 424 e-118
SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/ 424 e-118
SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/ 424 e-118
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 424 e-118
SLE320 (SLE320Q) /CSM/SL/SLE3-A/SLE320Q.Seq.d/ 424 e-118
SLE318 (SLE318Q) /CSM/SL/SLE3-A/SLE318Q.Seq.d/ 424 e-118
SLE216 (SLE216Q) /CSM/SL/SLE2-A/SLE216Q.Seq.d/ 424 e-118
SLB358 (SLB358Q) /CSM/SL/SLB3-C/SLB358Q.Seq.d/ 424 e-118

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 424 0.0 2
AC162431|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE. 48 0.29 1
AC156169|AC156169.2 Bos taurus clone CH240-50N13, *** SEQUENCING IN PROGRESS ***, 60 unordered pieces. 48 0.29 1
AC148223|AC148223.1 Colobus guereza clone CH272-19E23, WORKING DRAFT SEQUENCE, 4 ordered pieces. 48 0.29 1
CL469448|CL469448.1 SAIL_1303_H04.v1 SAIL Collection Arabidopsis thaliana genomic clone SAIL_1303_H04.v1, genomic survey sequence. 48 0.29 1
CR848761|CR848761.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 34 0.60 2
AX344185|AX344185.1 Sequence 32 from Patent WO0200926. 40 1.1 3
AX251781|AX251781.1 Sequence 42 from Patent WO0168911. 40 1.1 3
BD460245|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle. 40 1.1 3
BD452167|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle. 40 1.1 3
dna update 2005.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 159 1e-37

protein update 2008.11.12
PSORT

psg: 0.65 gvh: 0.41 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: mitochondrial
24.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: peroxisomal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SHA573 is cyt

5' end seq. ID SHA573F
5' end seq.
>SHA573F.Seq
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNNN
NNNNNN
Length of 5' end seq. 306
3' end seq. ID SHA573Z
3' end seq.
>SHA573Z.Seq
NNNNNNNNNNAACCAAGACTGTCANCGGTAAGACCACCNNTCAATCATNATCAAGNTCAT
CATCATCCATCTGTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGNTGATGTTG
CTGGTAACCTCAATGTCGTTGCCTCANAAGCCAATCAAGCTAAAATTGCCTCTGGTACTG
TATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCA
CCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAA
AAGCTGCTATGGCTGCTGCCTNTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTG
AATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTA
AAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTT
ATTAACTTTTTAAACACACCCTTTTCAATTTTAAAACAATACAAA
Length of 3' end seq. 525
Connected seq. ID SHA573P
Connected seq.
>SHA573P.Seq
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA----
------AACCAAGACTGTCANCGGTAAGACCACCNNTCAATCATNATCAAGNTCATCATC
ATCCATCTGTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGNTGATGTTGCTGG
TAACCTCAATGTCGTTGCCTCANAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATT
CAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTC
AAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGC
TGCTATGGCTGCTGCCTNTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATG
TGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAAT
AATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTA
ACTTTTTAAACACACCCTTTTCAATTTTAAAACAATACAAA
Length of connected seq. 811
Full length Seq ID -
Full length Seq. -
Length of full length seq. -