SHA572
Library SH
(Link to library)
Clone ID SHA572
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHA572 (SHA572Q) /CSM/SH/SHA5-C/SHA572Q.Seq.d/
ATTATATTATTATTTTTTTCTCAATAAATTAATATTTCTTTGTATTTCTTTTTATATTAT
TCATTAAAAAAAAAAAAANTAAAAAAAAAACCAAANNAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
iillffsq*INISLYFFLYYSLKKKKXKKKPXX---


Translated Amino Acid sequence (All Frames)
Frame A:
iillffsq*INISLYFFLYYSLKKKKXKKKPXX---


Frame B:
lyyyfflnkliflcisfyiih*kkkx*kknqxk---


Frame C:
yiiiffsin*yffvflfilfikkkkxkkktkxk---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 112
length of database: 80,480,566
effective HSP length: 17
effective length of query: 95
effective length of database: 78,821,179
effective search space: 7488012005
effective search space used: 7488012005
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 51617217
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 112
length of database: 55,409,929,374
effective HSP length: 22
effective length of query: 90
effective length of database: 54,274,350,600
effective search space: 4884691554000
effective search space used: 4884691554000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING: [000.000] 1134041138.dictycdb.dna: Blast: No valid letters to be indexed on context 0

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.









Dictyostelium discoideum cDNA Project Home



dna update 2005.12.10
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 68,554,160
protein update 2009. 4.14
PSORT

psg: 0.91 gvh: 0.25 alm: 0.59 top: 0.93 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.19 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: mitochondrial

>> prediction for SHA572 is nuc

5' end seq. ID SHA572F
5' end seq.
>SHA572F.Seq
ATTATATTATTATTTTTTTCTCAATAAATTAATATTTCTTTGTATTTCTTTTTATATTAT
TCATTAAAAAAAAAAAAANTAAAAAAAAAACCAAANNAAAAANNNNNNNNNN
Length of 5' end seq. 112
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -