>SHA514 (SHA514Q) /CSM/SH/SHA5-A/SHA514Q.Seq.d/
XXXXXXXXXXCTGGTTGTGATGGTACAACAACTGGCAGGGCTACAGGTCATTACACAGAA
TCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAANAGGAATGGAATGT
CATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTA
GATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTNAAAATCCAAATTTC
ATTTATAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACATNAGTGNTCCTC
AGTGNATG

---GCDGTTTGRATGHYTESGTGNPHLCDRYHCKXGMECHVVNGVPECLPSNYKCLDCLD
LHCERQGDFTCFMVXNPNFIYSKHSCYGESCCKFTXVXLSX

Frame A:
---wl*wynnwqgyrslhriryr*stfm**isl*xrngmscc*wcsrmftiklqmfrlfr
ssl*etr*fhlfygxkskfhl**t*llw*iml*ihxsxpqxm


Frame B:
---GCDGTTTGRATGHYTESGTGNPHLCDRYHCKXGMECHVVNGVPECLPSNYKCLDCLD
LHCERQGDFTCFMVXNPNFIYSKHSCYGESCCKFTXVXLSX


Frame C:
---vvmvqqlaglqvitqnqvqvihiyvidiivkxewnvmllmvfqnvyhqttnv*iv*i
fivrdkvispvlwxkiqisfivnivvmvnhvvnshxxssvx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA514 (SHA514Q) /CSM/SH/SHA5-A/SHA514Q.Seq.d/                        561   e-159
SSD478 (SSD478Q) /CSM/SS/SSD4-D/SSD478Q.Seq.d/                        523   e-148
SLE384 (SLE384Q) /CSM/SL/SLE3-D/SLE384Q.Seq.d/                        523   e-148
SLE329 (SLE329Q) /CSM/SL/SLE3-B/SLE329Q.Seq.d/                        523   e-148
SLB794 (SLB794Q) /CSM/SL/SLB7-D/SLB794Q.Seq.d/                        523   e-148
SHL803 (SHL803Q) /CSM/SH/SHL8-A/SHL803Q.Seq.d/                        523   e-148
SHL777 (SHL777Q) /CSM/SH/SHL7-D/SHL777Q.Seq.d/                        523   e-148
SHL602 (SHL602Q) /CSM/SH/SHL6-A/SHL602Q.Seq.d/                        523   e-148
SHL588 (SHL588Q) /CSM/SH/SHL5-D/SHL588Q.Seq.d/                        523   e-148
SHL457 (SHL457Q) /CSM/SH/SHL4-C/SHL457Q.Seq.d/                        523   e-148

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   0.33   2
AC116220|AC116220.5 Rattus norvegicus clone CH230-256P17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46   0.42   1
AC103491|AC103491.6 Rattus norvegicus clone CH230-157G21, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   0.42   1
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   1.6    1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   1.6    1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   1.6    1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   1.6    1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence.    44   1.6    1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    44   1.6    1
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence.    44   1.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                207   1e-52
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                152   3e-36
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    45   8e-04
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    40   0.032
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    37   0.16
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    37   0.21
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    37   0.21
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    35   0.79
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    34   1.8
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    33   3.0

 psg: 0.69  gvh: 0.38  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 1.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHA514 is nuc

>SHA514Z.Seq
NNNNNNNNNNCTGGTTGTGATGGTACAACAACTGGCAGGGCTACAGGTCATTACACAGAA
TCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAANAGGAATGGAATGT
CATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTA
GATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTNAAAATCCAAATTTC
ATTTATAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACATNAGTGNTCCTC
AGTGNATG