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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA444
Library SH
(Link to library)
Clone ID SHA444
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11259-1
Original site URL
Representative seq. ID SHA444P
(Link to Original site)
Representative DNA sequence 
>SHA444 (SHA444Q) /CSM/SH/SHA4-B/SHA444Q.Seq.d/
ATTGTATTATTATTTTTTTAATTTTATTTTTTTCATTATCCATTAAAAAAACGCTCCCCA
TAAGAAATATTACAATCAATCATTCTAGTAACCAAATATTTATAACAAGATGTATTTGTA
TTGGTAATGAAATTGAAAAAAAAAAXXXXXXXXXXACAAAAACTAGTGCATTTGGAAGCT
CCTCAACTCCTTCATTTGGTGGTACATCTGCATTTGGTGGCCCTCAAACTACAGGTGCAT
TTGGTAGCACTACAACAACTAGTATGTTTGGAAGATCCCCAACCACTTTATATGGTAGTT
CTCCAACTACAACGACTAGTATGTTTGGAAGTAATTCAAACACTTTATATGGTAGTTCTC
CAACTACAACAACTAGTATGTTTGGAAGATCCCCAACCACTTTATATGGTAGTTCTCCAA
CTCCAACGACTAGTATATTTGGAAGCTCCTCAACAACTTTATATGGTAGTTCTCCAACTA
CAACAACTAGTATATTTGGAAGCACTTCAACCCCTTTATTTGGCAGTGCTTCAACTACAA
AAACTAGTTTATTTGGAAGCTCCTCAATATTTGATGCAAAAAATCTCAACAAGACAACTC
CAAAAGAAGAAATAAAGAAAGAATCTGAGGATATAAATGAAAATTCTTCTGAATTACCAG
AATTAGTTCAAGATGAAGATTACGATATAGACCAAGTTGAAGATTTAGATGAAGATCAAG
TTGAAGATTTAGATGAAGATTACGATGAAGATCAAGTTGAAGATTACGATGAAGATCAAG
TTGAAGATTTAGATGAAGATCAAGTTGAAAATTCAAAAGATTCAGTTTAAGTTGAAGATG
ATGATGATATTGTTTATTGATGAGATAGTTATTACAAAAATAAAGGACAAAACAAAATAA
AAATTCAAACAAAACAAAAAAAAAGNATAAATCTAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
CIIIFLILFFSLSIKKTLPIRNITINHSSNQIFITRCICIGNEIEKK---

---TKTSAFGSSSTPSFGGTSAFGGPQTTGAFGSTTTTSMFGRSPTTLYGSSPTTTTSMF
GSNSNTLYGSSPTTTTSMFGRSPTTLYGSSPTPTTSIFGSSSTTLYGSSPTTTTSIFGST
STPLFGSASTTKTSLFGSSSIFDAKNLNKTTPKEEIKKESEDINENSSELPELVQDEDYD
IDQVEDLDEDQVEDLDEDYDEDQVEDYDEDQVEDLDEDQVENSKDSV*veddddivy**d
syyknkgqnkikiqtkqkkxinlk
Translated Amino Acid sequence (All Frames) 
Frame A:
ivllff*fyffhyplkkrsp*eilqsiilvtkyl*qdvfvlvmklkkk---

---TKTSAFGSSSTPSFGGTSAFGGPQTTGAFGSTTTTSMFGRSPTTLYGSSPTTTTSMF
GSNSNTLYGSSPTTTTSMFGRSPTTLYGSSPTPTTSIFGSSSTTLYGSSPTTTTSIFGST
STPLFGSASTTKTSLFGSSSIFDAKNLNKTTPKEEIKKESEDINENSSELPELVQDEDYD
IDQVEDLDEDQVEDLDEDYDEDQVEDYDEDQVEDLDEDQVENSKDSV*veddddivy**d
syyknkgqnkikiqtkqkkxinlk

Frame B:
lyyyffnfiffiih*knaphkkyynqsf**pniynkmylyw**n*kkk---

---qklvhleapqllhlvvhlhlvalklqvhlvalqqlvcledpqplymvvlqlqrlvcl
eviqtlymvvlqlqqlvcledpqplymvvlqlqrlvyleapqqlymvvlqlqqlvyleal
qplylavlqlqklvyleapqylmqkistrqlqkkk*rknlri*mkillnyqn*fkmkiti
*tklki*mkiklki*mkitmkiklkitmkiklki*mkiklkiqkiqfklkmmmilfidei
vitkikdktk*kfkqnkkkx*i*k

Frame C:
CIIIFLILFFSLSIKKTLPIRNITINHSSNQIFITRCICIGNEIEKK---

---kn*ciwkllnsfiwwyiciwwpsnyrciw*hynn*yvwkipnhfiw*fsnynd*yvw
k*fkhfiw*fsnynn*yvwkipnhfiw*fsnsnd*yiwkllnnfiw*fsnynn*yiwkhf
npfiwqcfnykn*fiwkllni*ckksqqdnskrrnkeri*gyk*kff*itrissr*rlry
rps*rfr*rss*rfr*rlr*rss*rlr*rss*rfr*rss*kfkrfsls*r***ycllmr*
llqk*rtkqnknsnktkkkxkskk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA444 (SHA444Q) /CSM/SH/SHA4-B/SHA444Q.Seq.d/                       1423   0.0
AHL862 (AHL862Q) /CSM/AH/AHL8-C/AHL862Q.Seq.d/                       1423   0.0
AHF667 (AHF667Q) /CSM/AH/AHF6-C/AHF667Q.Seq.d/                       1413   0.0
AHD202 (AHD202Q) /CSM/AH/AHD2-A/AHD202Q.Seq.d/                       1413   0.0
AHL434 (AHL434Q) /CSM/AH/AHL4-B/AHL434Q.Seq.d/                       1407   0.0
AHQ675 (AHQ675Q) /CSM/AH/AHQ6-D/AHQ675Q.Seq.d/                       1398   0.0
AHO891 (AHO891Q) /CSM/AH/AHO8-D/AHO891Q.Seq.d/                       1396   0.0
SHD827 (SHD827Q) /CSM/SH/SHD8-B/SHD827Q.Seq.d/                       1388   0.0
AHE420 (AHE420Q) /CSM/AH/AHE4-A/AHE420Q.Seq.d/                       1352   0.0
CHN786 (CHN786Q) /CSM/CH/CHN7-D/CHN786Q.Seq.d/                       1318   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.  1423   0.0    1
AE017352|AE017352.1 Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence.    80   1e-10  1
AE001424|AE001424.1 Plasmodium falciparum 3D7 chromosome 2 section 61 of 73 of the complete sequence.    54   6e-06  2
A58932|A58932.1 Sequence 1 from Patent WO9641877.                  52   6e-06  2
AR131271|AR131271.1 Sequence 1 from patent US 6191270.             52   6e-06  2
BM169999|BM169999.1 EST572522 PyBS Plasmodium yoelii yoelii cDNA clone PYCPZ73 5' end, mRNA sequence.    64   6e-06  1
BM168652|BM168652.1 EST571175 PyBS Plasmodium yoelii yoelii cDNA clone PYCPD91 5' end, mRNA sequence.    64   6e-06  1
BM160377|BM160377.1 EST562900 PyBS Plasmodium yoelii yoelii cDNA clone PYCJQ52 5' end, mRNA sequence.    64   6e-06  1
AX536317|AX536317.1 Sequence 1 from Patent WO0238176.              52   6e-06  2
AX428966|AX428966.1 Sequence 1 from Patent EP1201250.              52   6e-06  2
dna update 2005.12. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_46(AC116963|pid:none) Dictyostelium discoideum chromoso...   176   1e-42
(Q54EQ8) RecName: Full=Nuclear pore complex protein Nup98-Nup96;...    42   0.037
AC116957_76(AC116957|pid:none) Dictyostelium discoideum chromoso...    41   0.063
(Q555D2) RecName: Full=Uncharacterized protein DDB_G0274915;           41   0.063
AP007155_966(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    35   2.6
(Q02199) RecName: Full=Nucleoporin NUP49/NSP49; AltName: Full=Nu...    34   5.9
AC116963_44(AC116963|pid:none) Dictyostelium discoideum chromoso...    34   7.7
FM992691_457(FM992691|pid:none) Candida dubliniensis CD36 chromo...    34   7.7
protein update 2009. 4.14
PSORT 

 psg: 1.02  gvh: 0.61  alm: 0.27  top: 0.70  tms: 0.07  mit: 0.37  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SHA444 is cyt
5' end seq. ID SHA444F
5' end seq. 
>SHA444F.Seq
ATTGTATTATTATTTTTTTAATTTTATTTTTTTCATTATCCATTAAAAAAACGCTCCCCA
TAAGAAATATTACAATCAATCATTCTAGTAACCAAATATTTATAACAAGATGTATTTGTA
TTGGTAATGAAATTGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 155
3' end seq. ID SHA444Z
3' end seq. 
>SHA444Z.Seq
NNNNNNNNNNACAAAAACTAGTGCATTTGGAAGCTCCTCAACTCCTTCATTTGGTGGTAC
ATCTGCATTTGGTGGCCCTCAAACTACAGGTGCATTTGGTAGCACTACAACAACTAGTAT
GTTTGGAAGATCCCCAACCACTTTATATGGTAGTTCTCCAACTACAACGACTAGTATGTT
TGGAAGTAATTCAAACACTTTATATGGTAGTTCTCCAACTACAACAACTAGTATGTTTGG
AAGATCCCCAACCACTTTATATGGTAGTTCTCCAACTCCAACGACTAGTATATTTGGAAG
CTCCTCAACAACTTTATATGGTAGTTCTCCAACTACAACAACTAGTATATTTGGAAGCAC
TTCAACCCCTTTATTTGGCAGTGCTTCAACTACAAAAACTAGTTTATTTGGAAGCTCCTC
AATATTTGATGCAAAAAATCTCAACAAGACAACTCCAAAAGAAGAAATAAAGAAAGAATC
TGAGGATATAAATGAAAATTCTTCTGAATTACCAGAATTAGTTCAAGATGAAGATTACGA
TATAGACCAAGTTGAAGATTTAGATGAAGATCAAGTTGAAGATTTAGATGAAGATTACGA
TGAAGATCAAGTTGAAGATTACGATGAAGATCAAGTTGAAGATTTAGATGAAGATCAAGT
TGAAAATTCAAAAGATTCAGTTTAAGTTGAAGATGATGATGATATTGTTTATTGATGAGA
TAGTTATTACAAAAATAAAGGACAAAACAAAATAAAAATTCAAACAAAACAAAAAAAAAG
NATAAATCTAAAAAA
Length of 3' end seq. 795
Connected seq. ID SHA444P
Connected seq. 
>SHA444P.Seq
ATTGTATTATTATTTTTTTAATTTTATTTTTTTCATTATCCATTAAAAAAACGCTCCCCA
TAAGAAATATTACAATCAATCATTCTAGTAACCAAATATTTATAACAAGATGTATTTGTA
TTGGTAATGAAATTGAAAAAAAAAA----------ACAAAAACTAGTGCATTTGGAAGCT
CCTCAACTCCTTCATTTGGTGGTACATCTGCATTTGGTGGCCCTCAAACTACAGGTGCAT
TTGGTAGCACTACAACAACTAGTATGTTTGGAAGATCCCCAACCACTTTATATGGTAGTT
CTCCAACTACAACGACTAGTATGTTTGGAAGTAATTCAAACACTTTATATGGTAGTTCTC
CAACTACAACAACTAGTATGTTTGGAAGATCCCCAACCACTTTATATGGTAGTTCTCCAA
CTCCAACGACTAGTATATTTGGAAGCTCCTCAACAACTTTATATGGTAGTTCTCCAACTA
CAACAACTAGTATATTTGGAAGCACTTCAACCCCTTTATTTGGCAGTGCTTCAACTACAA
AAACTAGTTTATTTGGAAGCTCCTCAATATTTGATGCAAAAAATCTCAACAAGACAACTC
CAAAAGAAGAAATAAAGAAAGAATCTGAGGATATAAATGAAAATTCTTCTGAATTACCAG
AATTAGTTCAAGATGAAGATTACGATATAGACCAAGTTGAAGATTTAGATGAAGATCAAG
TTGAAGATTTAGATGAAGATTACGATGAAGATCAAGTTGAAGATTACGATGAAGATCAAG
TTGAAGATTTAGATGAAGATCAAGTTGAAAATTCAAAAGATTCAGTTTAAGTTGAAGATG
ATGATGATATTGTTTATTGATGAGATAGTTATTACAAAAATAAAGGACAAAACAAAATAA
AAATTCAAACAAAACAAAAAAAAAGNATAAATCTAAAAAA
Length of connected seq. 930
Full length Seq ID -
Full length Seq. -
Length of full length seq. -