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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA435
Library SH
(Link to library)
Clone ID SHA435
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11279-1
Original site URL
Representative seq. ID SHA435P
(Link to Original site)
Representative DNA sequence 
>SHA435 (SHA435Q) /CSM/SH/SHA4-B/SHA435Q.Seq.d/
TTGGCCTACTGGAAAATTAAATTAAAATAAAAATAATAATATTATTAATAAAAAAAATAA
AAATAAAAATAAAAATATCATAATATTATTAATAAAAAAAAAAXXXXXXXXXXTGTAATT
AGTAAAAAGTATCAAAAAATATTACCAAACAGTGGGAAGAATACAGGTTCAATCTTGGAG
ACTCCCCAACTCCCATATCGCACTATCTGGTTCAAATTGTGCATTCATGTGGGATGATTC
ATTCAATTTTAAGAAACGAATGTTGAAAGCACGTTATTACAGTGGATTCATTTCAATTTG
TAGAGATACAGTACCTGGTAAAATTAGATTGGATAAAGATGGTAGATCCCCTAAAATTCA
ATACACACTATCGGATCGTGATTGGAAATCAATGTTACCATCAATTGAAGCATCGTTAAG
AGCATTGATAAAGATTGGTGCAATTGAAGCATCTATACCAATTAGTGGCTTTAAACCTGG
AAATCAAGATACAATTGAACAGTATATTAAAGCAATTAAATCAAATGGTTATAAATCTAA
TCAAACCGTTATACTTAGTGCTCATCAAATGGGTTCTTGTAGAATGGGTTCAAGTAAATC
AAATTCTGTCGTCAATGAAAATGGTGAATCTTGGGATGTTAAAAGATTATTCATTGCCGA
TGGTTCTGTATTACCAAGTTCAGTTGGTGTTAACCCAATGATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
wptgkln*NKNNNIINKKNKNKNKNIIILLIKKK---

---VISKKYQKILPNSGKNTGSILETPQLPYRTIWFKLCIHVG*fiqf*etnvestllqw
ihfnl*rystw*n*ig*rw*ip*nsihtigs*leinvtin*sivksidkdwcn*siytn*
wl*twksryn*tvy*sn*ikwl*i*snryt*cssngfl*ngfk*ikfcrq*kw*ilgc*k
iihcrwfcitkfswc*pnd
Translated Amino Acid sequence (All Frames) 
Frame A:
laywkiklk*k**yy**kk*k*k*kyhniinkkk---

---cn**kvsknitkqweeyrfnlgdsptpishylvqivhscgmihsilrnec*khvitv
dsfqfveiqylvkldwikmvdplkfnthyrivignqcyhqlkhr*eh**rlvqlkhlyql
valnleikiqlnsilkqlnqmvinlikplylvlikwvlvewvqvnqilssmkmvnlgmlk
dyslpmvlyyqvqlvltq*l

Frame B:
wptgkln*NKNNNIINKKNKNKNKNIIILLIKKK---

---VISKKYQKILPNSGKNTGSILETPQLPYRTIWFKLCIHVG*fiqf*etnvestllqw
ihfnl*rystw*n*ig*rw*ip*nsihtigs*leinvtin*sivksidkdwcn*siytn*
wl*twksryn*tvy*sn*ikwl*i*snryt*cssngfl*ngfk*ikfcrq*kw*ilgc*k
iihcrwfcitkfswc*pnd

Frame C:
gllen*ikikiiillikkikikikis*yy**kk---

---*lvksikkyyqtvgriqvqswrlpnshialsgsncafmwddsfnfkkrmlkaryysg
fisicrdtvpgkirldkdgrspkiqytlsdrdwksmlpsieaslralikigaieasipis
gfkpgnqdtieqyikaiksngyksnqtvilsahqmgscrmgssksnsvvnengeswdvkr
lfiadgsvlpssvgvnpmi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA435 (SHA435Q) /CSM/SH/SHA4-B/SHA435Q.Seq.d/                       1172   0.0
AHQ789 (AHQ789Q) /CSM/AH/AHQ7-D/AHQ789Q.Seq.d/                       1172   0.0
VHK645 (VHK645Q) /CSM/VH/VHK6-B/VHK645Q.Seq.d/                       1156   0.0
CHN707 (CHN707Q) /CSM/CH/CHN7-A/CHN707Q.Seq.d/                       1156   0.0
VHD822 (VHD822Q) /CSM/VH/VHD8-A/VHD822Q.Seq.d/                       1148   0.0
SSL780 (SSL780Q) /CSM/SS/SSL7-D/SSL780Q.Seq.d/                       1098   0.0
VFD827 (VFD827Q) /CSM/VF/VFD8-B/VFD827Q.Seq.d/                       1017   0.0
AHI503 (AHI503Q) /CSM/AH/AHI5-A/AHI503Q.Seq.d/                        997   0.0
CHR750 (CHR750Q) /CSM/CH/CHR7-C/CHR750Q.Seq.d/                        991   0.0
AHM220 (AHM220Q) /CSM/AH/AHM2-A/AHM220Q.Seq.d/                        971   0.0
own update 2002.10.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP008162|AP008162.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT23A03, TM1579.    48   0.12   3
AV769048|AV769048.1 Lotus corniculatus var. japonicus cDNA clone:MWL029b08_f, 3' end.    48   0.25   1
BP029203|BP029203.1 Lotus corniculatus var. japonicus cDNA, clone:MF018e11_f, 3' end.    48   0.25   1
AC159790|AC159790.2 Bos taurus clone CH240-68N5, *** SEQUENCING IN PROGRESS ***, 30 unordered pieces.    48   0.25   1
AG238727|AG238727.1 Lotus japonicus DNA, clone:LjT02p02_sfi.    48   0.25   1
CN255041|CN255041.1 BIP1350 BIP up-regulated phloem library after plant infestation with Myzus persicae Apium graveolens cDNA, mRNA sequence.    46   0.99   1
AC140937|AC140937.1 Gallus gallus chromosome UNK clone TAM32-30E15, complete sequence.    46   0.99   1
AC154473|AC154473.2 Mus musculus BAC clone RP24-120O11 from chromosome 16, complete sequence.    46   0.99   1
AC144873|AC144873.2 Pongo pygmaeus clone CH253-1J18, WORKING DRAFT SEQUENCE, 3 ordered pieces.    32   1.9    2
AC074348|AC074348.6 Homo sapiens BAC clone RP11-678B3 from 7, complete sequence.    32   1.9    2
dna update 2005.12. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM426673_1(AM426673|pid:none) Vitis vinifera contig VV78X232609....   105   2e-21
AB015474_14(AB015474|pid:none) Arabidopsis thaliana genomic DNA,...   101   2e-20
AJ316230_1(AJ316230|pid:none) Arabidopsis thaliana mRNA for alco...   101   2e-20
AL022580_15(AL022580|pid:none) Arabidopsis thaliana DNA chromoso...    99   1e-19
EF678023_1(EF678023|pid:none) Picea sitchensis clone WS02818_L23...    94   3e-18
AP007157_512(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    94   3e-18
CU633459_8(CU633459|pid:none) Podospora anserina genomic DNA chr...    93   7e-18
AY085885_1(AY085885|pid:none) Arabidopsis thaliana clone 19314 m...    93   9e-18
AY039977_1(AY039977|pid:none) Arabidopsis thaliana unknown prote...    93   9e-18
AC174363_24(AC174363|pid:none) Medicago truncatula clone mth2-41...    91   3e-17
protein update 2009. 4.14
PSORT 

 psg: 0.31  gvh: 0.31  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SHA435 is nuc
5' end seq. ID SHA435F
5' end seq. 
>SHA435F.Seq
TTGGCCTACTGGAAAATTAAATTAAAATAAAAATAATAATATTATTAATAAAAAAAATAA
AAATAAAAATAAAAATATCATAATATTATTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 113
3' end seq. ID SHA435Z
3' end seq. 
>SHA435Z.Seq
NNNNNNNNNNTGTAATTAGTAAAAAGTATCAAAAAATATTACCAAACAGTGGGAAGAATA
CAGGTTCAATCTTGGAGACTCCCCAACTCCCATATCGCACTATCTGGTTCAAATTGTGCA
TTCATGTGGGATGATTCATTCAATTTTAAGAAACGAATGTTGAAAGCACGTTATTACAGT
GGATTCATTTCAATTTGTAGAGATACAGTACCTGGTAAAATTAGATTGGATAAAGATGGT
AGATCCCCTAAAATTCAATACACACTATCGGATCGTGATTGGAAATCAATGTTACCATCA
ATTGAAGCATCGTTAAGAGCATTGATAAAGATTGGTGCAATTGAAGCATCTATACCAATT
AGTGGCTTTAAACCTGGAAATCAAGATACAATTGAACAGTATATTAAAGCAATTAAATCA
AATGGTTATAAATCTAATCAAACCGTTATACTTAGTGCTCATCAAATGGGTTCTTGTAGA
ATGGGTTCAAGTAAATCAAATTCTGTCGTCAATGAAAATGGTGAATCTTGGGATGTTAAA
AGATTATTCATTGCCGATGGTTCTGTATTACCAAGTTCAGTTGGTGTTAACCCAATGATT
A
Length of 3' end seq. 601
Connected seq. ID SHA435P
Connected seq. 
>SHA435P.Seq
TTGGCCTACTGGAAAATTAAATTAAAATAAAAATAATAATATTATTAATAAAAAAAATAA
AAATAAAAATAAAAATATCATAATATTATTAATAAAAAAAAAA----------TGTAATT
AGTAAAAAGTATCAAAAAATATTACCAAACAGTGGGAAGAATACAGGTTCAATCTTGGAG
ACTCCCCAACTCCCATATCGCACTATCTGGTTCAAATTGTGCATTCATGTGGGATGATTC
ATTCAATTTTAAGAAACGAATGTTGAAAGCACGTTATTACAGTGGATTCATTTCAATTTG
TAGAGATACAGTACCTGGTAAAATTAGATTGGATAAAGATGGTAGATCCCCTAAAATTCA
ATACACACTATCGGATCGTGATTGGAAATCAATGTTACCATCAATTGAAGCATCGTTAAG
AGCATTGATAAAGATTGGTGCAATTGAAGCATCTATACCAATTAGTGGCTTTAAACCTGG
AAATCAAGATACAATTGAACAGTATATTAAAGCAATTAAATCAAATGGTTATAAATCTAA
TCAAACCGTTATACTTAGTGCTCATCAAATGGGTTCTTGTAGAATGGGTTCAAGTAAATC
AAATTCTGTCGTCAATGAAAATGGTGAATCTTGGGATGTTAAAAGATTATTCATTGCCGA
TGGTTCTGTATTACCAAGTTCAGTTGGTGTTAACCCAATGATTA
Length of connected seq. 694
Full length Seq ID -
Full length Seq. -
Length of full length seq. -