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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA396
Library SH
(Link to library)
Clone ID SHA396
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14396-1
Original site URL
Representative seq. ID SHA396P
(Link to Original site)
Representative DNA sequence 
>SHA396 (SHA396Q) /CSM/SH/SHA3-D/SHA396Q.Seq.d/
TTTCAAAAAATTTTATTCAATTGTAAATAACCAATTAAAATAAAATAAATTATTAAATTT
AAAAATGAAATTATTATTAGTTTTATTATCTCTTCTTTTAACATTTTCAGTATTGGTACA
ATCTGAAGAAGCCTATTTTGCTTTAAAAACCTATCAAGACAATGATTTTATTTTCAAATT
AACTGATTCAGAAAAAATACAAAAAGCCAGAGATATTTTGTCTGGAAAGGAAACTGAAGA
AGTTCATGTAATGGGTAGAATTAGAAAGTCAAATAAAGACTATAATCCAAAGTATTCCTT
TCATATTGACCCAGATACAGTCACATTTTTCAGTATGGCCATTGAAGTTTGTGATGCTAC
AGCTAGTTATGTAGAAGATTACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTT
CTGGTGTCCATGGGCTTCAAAGCTAACAAAAGAAATTAAAGTTTAAGAGTTAAATCAAAT
TAGCCATGATAAATCAAATTAAATAATTTTTAAAAAAATTATTAATAAAGTTTTTTTTAA
CTAAAGTTTTTATAANNNAAAAXXXXXXXXXXTTTCAAAAAATTTTATTCAATTGTAAAT
AACCAATTAAAATAAAATAAATTATTAAATTTAAAAATGAAATTATTATTAGTTTTATTA
TCTCTTCTTTTAACATTTTCAGTATTGGTACAATCTGAAGAAGCCTATTTTGCTTTAAAA
ACCTATCAAGACAATGATTTTATTTTCAAATTAACTGATTCAGAAAAAATACAAAAAGCC
AGAGATATTTTGTCTGGAAAGGAAACTGAAGAAGTTCATGTAATGGGTAGAATTAGAAAG
TCAAATAAAGACTATAATCCAAAGTATTCCTTTCATATTGACCCAGATACAGTCACATTT
TTCAGTATGGCCATTGAAGTTTGTGATGCTACAGCTAGTTATGTAGAAGATTACCTTGAT
GAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCCATGGGCTTCAAAGCTAACA
AAAGAAATTAAAGTTTAAGAGTTAAATCAAATTAGCCATGATAAATCAAATTAAATAATT
TTTAAAAAAATTATTAATAAAGTTTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
sknfiql*itn*nkiny*i*k*nyy*fyylff*hfqywynlkkpill*kpiktmilfsn*
liqkkykkpeifclerklkkfm*wvelesqiktiiqsipfiltqiqshfsvwplkfvmlq
lvm*kitlmrpvvlssqvasgvhglqs*qkklkfks*iklaminqik*FLKKLLIKFFLT
KVFIXX---

---FKKFYSIVNNQLK*nkllnlkmklllvllsllltfsvlvqseeayfalktyqdndfi
fkltdsekiqkardilsgketeevhvmgrirksnkdynpkysfhidpdtvtffsmaievc
datasyvedyldeacgaflpgcfwcpwaskltkeikv*elnqishdksn*iifkkiinkv
f
Translated Amino Acid sequence (All Frames) 
Frame A:
fqkilfnck*pikik*iikfkneiiisfiissfnifsigti*rslfcfknlsrq*fyfqi
n*frkntksqryfvwkgn*rsscng*n*kvk*rl*skvflsy*pryshifqygh*sl*cy
s*lcrrlp**glwcfpprlllvsmgfkankrn*slrvksn*p**iklnnf*kny**sff*
lkfl*xk---

---fqkilfnck*pikik*iikfkneiiisfiissfnifsigti*rslfcfknlsrq*fy
fqin*frkntksqryfvwkgn*rsscng*n*kvk*rl*skvflsy*pryshifqygh*sl
*cys*lcrrlp**glwcfpprlllvsmgfkankrn*slrvksn*p**iklnnf*kny**s
ff

Frame B:
fkkfysivnnqlk*nkllnlkmklllvllsllltfsvlvqseeayfalktyqdndfifkl
tdsekiqkardilsgketeevhvmgrirksnkdynpkysfhidpdtvtffsmaievcdat
asyvedyldeacgaflpgcfwcpwaskltkeikv*elnqishdksn*iifkkiinkvffn
*sfyxxk---

---FKKFYSIVNNQLK*nkllnlkmklllvllsllltfsvlvqseeayfalktyqdndfi
fkltdsekiqkardilsgketeevhvmgrirksnkdynpkysfhidpdtvtffsmaievc
datasyvedyldeacgaflpgcfwcpwaskltkeikv*elnqishdksn*iifkkiinkv
f

Frame C:
sknfiql*itn*nkiny*i*k*nyy*fyylff*hfqywynlkkpill*kpiktmilfsn*
liqkkykkpeifclerklkkfm*wvelesqiktiiqsipfiltqiqshfsvwplkfvmlq
lvm*kitlmrpvvlssqvasgvhglqs*qkklkfks*iklaminqik*FLKKLLIKFFLT
KVFIXX---

---sknfiql*itn*nkiny*i*k*nyy*fyylff*hfqywynlkkpill*kpiktmilf
sn*liqkkykkpeifclerklkkfm*wvelesqiktiiqsipfiltqiqshfsvwplkfv
mlqlvm*kitlmrpvvlssqvasgvhglqs*qkklkfks*iklaminqik*flkkllikf
f
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM346 (SSM346Q) /CSM/SS/SSM3-B/SSM346Q.Seq.d/                        878   0.0
SSK104 (SSK104Q) /CSM/SS/SSK1-A/SSK104Q.Seq.d/                        878   0.0
SSJ895 (SSJ895Q) /CSM/SS/SSJ8-D/SSJ895Q.Seq.d/                        878   0.0
SSI384 (SSI384Q) /CSM/SS/SSI3-D/SSI384Q.Seq.d/                        878   0.0
SSG802 (SSG802Q) /CSM/SS/SSG8-A/SSG802Q.Seq.d/                        878   0.0
SSG503 (SSG503Q) /CSM/SS/SSG5-A/SSG503Q.Seq.d/                        878   0.0
SSF786 (SSF786Q) /CSM/SS/SSF7-D/SSF786Q.Seq.d/                        878   0.0
SSF548 (SSF548Q) /CSM/SS/SSF5-B/SSF548Q.Seq.d/                        878   0.0
SSE839 (SSE839Q) /CSM/SS/SSE8-B/SSE839Q.Seq.d/                        878   0.0
SSC588 (SSC588Q) /CSM/SS/SSC5-D/SSC588Q.Seq.d/                        878   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.   182   e-112  5
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   145   5e-79  9
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   141   4e-29  1
AG379690|AG379690.1 Mus musculus molossinus DNA, clone:MSMg01-188M12.T7, genomic survey sequence.    40   0.005  2
CW093280|CW093280.1 104_456_10999678_116_37472_091 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 10999678, genomic survey sequence.    54   0.006  1
CW066067|CW066067.1 104_313_10523491_115_30149 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 10523491, genomic survey sequence.    54   0.006  1
BZ367707|BZ367707.1 id06b02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone id06b02 5', DNA sequence.    54   0.006  1
CW339637|CW339637.1 104_840_11485376_116_36145_026 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11485376, genomic survey sequence.    54   0.006  1
CW295142|CW295142.1 104_776_11460773_116_35616_025 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11460773, genomic survey sequence.    54   0.006  1
BZ219200|BZ219200.1 CH230-259F15.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-259F15, DNA sequence.    40   0.007  2
dna update 2005.12. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   202   1e-50
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   133   9e-30
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   127   9e-28
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    45   0.004
CP000821_153(CP000821|pid:none) Shewanella sediminis HAW-EB3, co...    35   4.5
protein update 2008.11.12
PSORT 

 psg: 0.88  gvh: 0.35  alm: 0.39  top: 0.60  tms: 0.00  mit: 0.48  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHA396 is mit
5' end seq. ID SHA396F
5' end seq. 
>SHA396F.Seq
TTTCAAAAAATTTTATTCAATTGTAAATAACCAATTAAAATAAAATAAATTATTAAATTT
AAAAATGAAATTATTATTAGTTTTATTATCTCTTCTTTTAACATTTTCAGTATTGGTACA
ATCTGAAGAAGCCTATTTTGCTTTAAAAACCTATCAAGACAATGATTTTATTTTCAAATT
AACTGATTCAGAAAAAATACAAAAAGCCAGAGATATTTTGTCTGGAAAGGAAACTGAAGA
AGTTCATGTAATGGGTAGAATTAGAAAGTCAAATAAAGACTATAATCCAAAGTATTCCTT
TCATATTGACCCAGATACAGTCACATTTTTCAGTATGGCCATTGAAGTTTGTGATGCTAC
AGCTAGTTATGTAGAAGATTACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTT
CTGGTGTCCATGGGCTTCAAAGCTAACAAAAGAAATTAAAGTTTAAGAGTTAAATCAAAT
TAGCCATGATAAATCAAATTAAATAATTTTTAAAAAAATTATTAATAAAGTTTTTTTTAA
CTAAAGTTTTTATAANNNAAAANNNNNNNNNN
Length of 5' end seq. 572
3' end seq. ID SHA396Z
3' end seq. 
>SHA396Z.Seq
NNNNNNNNNNTTTCAAAAAATTTTATTCAATTGTAAATAACCAATTAAAATAAAATAAAT
TATTAAATTTAAAAATGAAATTATTATTAGTTTTATTATCTCTTCTTTTAACATTTTCAG
TATTGGTACAATCTGAAGAAGCCTATTTTGCTTTAAAAACCTATCAAGACAATGATTTTA
TTTTCAAATTAACTGATTCAGAAAAAATACAAAAAGCCAGAGATATTTTGTCTGGAAAGG
AAACTGAAGAAGTTCATGTAATGGGTAGAATTAGAAAGTCAAATAAAGACTATAATCCAA
AGTATTCCTTTCATATTGACCCAGATACAGTCACATTTTTCAGTATGGCCATTGAAGTTT
GTGATGCTACAGCTAGTTATGTAGAAGATTACCTTGATGAGGCCTGTGGTGCTTTCCTCC
CAGGTTGCTTCTGGTGTCCATGGGCTTCAAAGCTAACAAAAGAAATTAAAGTTTAAGAGT
TAAATCAAATTAGCCATGATAAATCAAATTAAATAATTTTTAAAAAAATTATTAATAAAG
TTTTTTT
Length of 3' end seq. 547
Connected seq. ID SHA396P
Connected seq. 
>SHA396P.Seq
TTTCAAAAAATTTTATTCAATTGTAAATAACCAATTAAAATAAAATAAATTATTAAATTT
AAAAATGAAATTATTATTAGTTTTATTATCTCTTCTTTTAACATTTTCAGTATTGGTACA
ATCTGAAGAAGCCTATTTTGCTTTAAAAACCTATCAAGACAATGATTTTATTTTCAAATT
AACTGATTCAGAAAAAATACAAAAAGCCAGAGATATTTTGTCTGGAAAGGAAACTGAAGA
AGTTCATGTAATGGGTAGAATTAGAAAGTCAAATAAAGACTATAATCCAAAGTATTCCTT
TCATATTGACCCAGATACAGTCACATTTTTCAGTATGGCCATTGAAGTTTGTGATGCTAC
AGCTAGTTATGTAGAAGATTACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTT
CTGGTGTCCATGGGCTTCAAAGCTAACAAAAGAAATTAAAGTTTAAGAGTTAAATCAAAT
TAGCCATGATAAATCAAATTAAATAATTTTTAAAAAAATTATTAATAAAGTTTTTTTTAA
CTAAAGTTTTTATAANNNAAAA----------TTTCAAAAAATTTTATTCAATTGTAAAT
AACCAATTAAAATAAAATAAATTATTAAATTTAAAAATGAAATTATTATTAGTTTTATTA
TCTCTTCTTTTAACATTTTCAGTATTGGTACAATCTGAAGAAGCCTATTTTGCTTTAAAA
ACCTATCAAGACAATGATTTTATTTTCAAATTAACTGATTCAGAAAAAATACAAAAAGCC
AGAGATATTTTGTCTGGAAAGGAAACTGAAGAAGTTCATGTAATGGGTAGAATTAGAAAG
TCAAATAAAGACTATAATCCAAAGTATTCCTTTCATATTGACCCAGATACAGTCACATTT
TTCAGTATGGCCATTGAAGTTTGTGATGCTACAGCTAGTTATGTAGAAGATTACCTTGAT
GAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCCATGGGCTTCAAAGCTAACA
AAAGAAATTAAAGTTTAAGAGTTAAATCAAATTAGCCATGATAAATCAAATTAAATAATT
TTTAAAAAAATTATTAATAAAGTTTTTTT
Length of connected seq. 1099
Full length Seq ID -
Full length Seq. -
Length of full length seq. -