NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA393
Library SH
(Link to library)
Clone ID SHA393
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11503-1
Original site URL
Representative seq. ID SHA393E
(Link to Original site)
Representative DNA sequence 
>SHA393 (SHA393Q) /CSM/SH/SHA3-D/SHA393Q.Seq.d/
GAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTTTCA
ATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCAAAT
TCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGTGGT
TTTAATAACGANCCNATATGCACATCACTCAAAGATGCTGTTANNAGAGCATTTTTATTA
ATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAANTGTAACATCAGAA
CAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAAT
GAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTCTGACATAT
GAACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCAAGATGGCTCTTCTTTCAATAT
ATGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAAAGCAC
TAAATTAAATAACATTTATTGTGGTTGTGAAGAATGTAAATATTTTNTTATATATGGTTC
TCAATTTATTCCCATCGTTAACCACACTTGCATTGATCCGACACTGACACCGACACCAAC
AACCTCAACAACACCAACCACATCAGCTTTAACAACATCAANTACAACTACAACATCAAC
TACNGCAACTATAACTACCTCANNTACATTACCATCAACATCAACAACAACAAGTCCAAT
TGATAGTAAGACTAGGAATATTATCATTGTTACAGTTATTTTGGG
sequence update 2002.10.27
Translated Amino Acid sequence 
ekqfsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGCG
FNNXPICTSLKDAVXRAFLLISNNSRVCIGIIGNIXVTSEQITLGNYCGALWITSENINN
ENNNYTIIDGSSSTQPFLTYEPEEENNQTQSCSRWLFFQYMNFTSWDWK*frcefikkkh
*ik*hllwl*rm*ifxyiwfsiyshr*phlh*sdtdtdtnnlnntnhisfnnixynynin
yxnynylxyitininnnksn***d*eyyhcysyfg
Translated Amino Acid sequence (All Frames) 
Frame A:
ekqfsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGCG
FNNXPICTSLKDAVXRAFLLISNNSRVCIGIIGNIXVTSEQITLGNYCGALWITSENINN
ENNNYTIIDGSSSTQPFLTYEPEEENNQTQSCSRWLFFQYMNFTSWDWK*frcefikkkh
*ik*hllwl*rm*ifxyiwfsiyshr*phlh*sdtdtdtnnlnntnhisfnnixynynin
yxnynylxyitininnnksn***d*eyyhcysyfg


Frame B:
knsflckfini*lenqiifqfclqyf*klflwfqrryaqiqrfy*itts*rfiihqkdvv
litxxyahhskmllxehfy*yqiivvfvlvslvi*x*hqnklhwviivvpcgslqkisim
kiiiiq*smdqaqpnhf*hmnqkkkitklnhvqdgssfni*isqvgignnsdvnlskkst
klnniycgceeckyfxiygsqfipivnhtcidptltptpttsttpttsalttsxttttst
tatittsxtlpststttspidsktrniiivtvil


Frame C:
ktvffvnlliyd*kik*ffnfvcnifkncfcgfsaampkfndfiklqhpngl*firrmwf
**rxxmhitqrccxxsifinik**sclywyhw*yxcnirtnyig*llwclvdhfrkyq**
k**lynnrwiklnptisdi*trrrk*pnsimfkmallsiyefhklgleiiqm*iyqkkal
n*itfivvvknvnixlymvlnlfpslttlalirh*hrhqqpqqhqphql*qhqxqlqhql
xql*lpxxhyhqhqqqqvqlivrlgilsllqlfw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA393 (SHA393Q) /CSM/SH/SHA3-D/SHA393Q.Seq.d/                        989   0.0
AHK839 (AHK839Q) /CSM/AH/AHK8-B/AHK839Q.Seq.d/                        989   0.0
AHK570 (AHK570Q) /CSM/AH/AHK5-C/AHK570Q.Seq.d/                        989   0.0
AHF753 (AHF753Q) /CSM/AH/AHF7-C/AHF753Q.Seq.d/                        989   0.0
VHE495 (VHE495Q) /CSM/VH/VHE4-D/VHE495Q.Seq.d/                        983   0.0
SHC657 (SHC657Q) /CSM/SH/SHC6-C/SHC657Q.Seq.d/                        983   0.0
AHC489 (AHC489Q) /CSM/AH/AHC4-D/AHC489Q.Seq.d/                        983   0.0
AHA119 (AHA119Q) /CSM/AH/AHA1-A/AHA119Q.Seq.d/                        983   0.0
SHD533 (SHD533Q) /CSM/SH/SHD5-B/SHD533Q.Seq.d/                        981   0.0
AHM643 (AHM643Q) /CSM/AH/AHM6-B/AHM643Q.Seq.d/                        981   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR376736|CR376736.5 Zebrafish DNA sequence from clone DKEYP-86G11 in linkage group 24.    54   0.005  1
CS105968|CS105968.1 Sequence 53 from Patent WO2005049861.          52   0.006  2
CQ977471|CQ977471.1 Sequence 57 from Patent WO2005001140.          52   0.006  2
AX826096|AX826096.1 Sequence 348 from Patent WO03072821.           52   0.009  2
AX822456|AX822456.1 Sequence 348 from Patent EP1340818.            52   0.009  2
AX795936|AX795936.1 Sequence 279 from Patent WO03052135.           52   0.009  2
CQ807158|CQ807158.1 Sequence 608 from Patent WO2004035803.         52   0.009  2
AX825968|AX825968.1 Sequence 220 from Patent WO03072821.           52   0.019  1
AX822328|AX822328.1 Sequence 220 from Patent EP1340818.            52   0.019  1
AX795820|AX795820.1 Sequence 163 from Patent WO03052135.           52   0.019  1
dna update 2005.12. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020283_1(AF020283|pid:none) Dictyostelium discoideum DG2044 ge...    54   8e-06
protein update 2008.11.12
PSORT 

 psg: 0.99  gvh: 0.48  alm: 0.21  top: 0.33  tms: 0.07  mit: 0.47  mip: 0.13
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.45  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: mitochondrial
	 20.0 %: Golgi
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for SHA393 is mit
5' end seq. ID SHA393F
5' end seq. 
>SHA393F.Seq
GAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTTTCA
ATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCAAAT
TCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGTGGT
TTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTATTA
ATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCAGAA
CAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAAT
GAAAATAATAATTATACAATAATCGATGGATCAAGCTCANCCCANCCNNNNNNNNNN
Length of 5' end seq. 417
3' end seq. ID SHA393Z
3' end seq. 
>SHA393Z.Seq
NNNNNNNNNNAACCTATATGCACATCACTCAAAGATGCTGTTAATAGAGCATTTTTATTA
ATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAGTGTAACATCAGAA
CAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAAT
GANAATAATANTTATACAATAATCGAGGATCAAGCTCAACCCAACCATTTCTGACATATG
AACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCAAGATGGCTCTTCTTTCAATATA
TGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAAAGCACT
AAATTAAATAACATTTATTGTGGTTGTGAAGAATGTAAATATTTTNTTATATATGGTTCT
CAATTTATTCCCATCGTTAACCACACTTGCATTGATCCGACACTGACACCGACACCAACA
ACCTCAACAACACCAACCACATCAGCTTTAACAACATCAANTACAACTACAACATCAACT
ACNGCAACTATAACTACCTCANNTACATTACCATCAACATCAACAACAACAAGTCCAATT
GATAGTAAGACTAGGAATATTATCATTGTTACAGTTATTTTGGG
Length of 3' end seq. 644
Connected seq. ID SHA393P
Connected seq. 
>SHA393P.Seq
GAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTTTCA
ATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCAAAT
TCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGTGGT
TTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTATTA
ATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCAGAA
CAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAAT
GAAAATAATAATTATACAATAATCGATGGATCAAGCTCANCCCANCC----------AAC
CTATATGCACATCACTCAAAGATGCTGTTAATAGAGCATTTTTATTAATATCAAATAATA
GTCGTGTTTGTATTGGTATCATTGGTAATATAAGTGTAACATCAGAACAAATTACATTGG
GTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAATGANAATAATANTT
ATACAATAATCGAGGATCAAGCTCAACCCAACCATTTCTGACATATGAACCAGAAGAAGA
AAATAACCAAACTCAATCATGTTCAAGATGGCTCTTCTTTCAATATATGAATTTCACAAG
TTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAAAGCACTAAATTAAATAACA
TTTATTGTGGTTGTGAAGAATGTAAATATTTTNTTATATATGGTTCTCAATTTATTCCCA
TCGTTAACCACACTTGCATTGATCCGACACTGACACCGACACCAACAACCTCAACAACAC
CAACCACATCAGCTTTAACAACATCAANTACAACTACAACATCAACTACNGCAACTATAA
CTACCTCANNTACATTACCATCAACATCAACAACAACAAGTCCAATTGATAGTAAGACTA
GGAATATTATCATTGTTACAGTTATTTTGGG
Length of connected seq. 1041
Full length Seq ID SHA393E
Full length Seq. 
>SHA393E.Seq
GAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTTTCA
ATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCAAAT
TCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGTGGT
TTTAATAACGANCCNATATGCACATCACTCAAAGATGCTGTTANNAGAGCATTTTTATTA
ATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAANTGTAACATCAGAA
CAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAAT
GAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTCTGACATAT
GAACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCAAGATGGCTCTTCTTTCAATAT
ATGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAAAGCAC
TAAATTAAATAACATTTATTGTGGTTGTGAAGAATGTAAATATTTTNTTATATATGGTTC
TCAATTTATTCCCATCGTTAACCACACTTGCATTGATCCGACACTGACACCGACACCAAC
AACCTCAACAACACCAACCACATCAGCTTTAACAACATCAANTACAACTACAACATCAAC
TACNGCAACTATAACTACCTCANNTACATTACCATCAACATCAACAACAACAAGTCCAAT
TGATAGTAAGACTAGGAATATTATCATTGTTACAGTTATTTTGGG
Length of full length seq. 825