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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA389
Library SH
(Link to library)
Clone ID SHA389
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID SHA389P
(Link to Original site)
Representative DNA sequence 
>SHA389 (SHA389Q) /CSM/SH/SHA3-D/SHA389Q.Seq.d/
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTAGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTXX
XXXXXXXXTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTGG
TTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTA
TATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACC
AGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGA
AACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATC
AGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATAT
CGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACAT
CGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGA
AGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATT
AGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGA
AACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAA
TCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAATTATT
sequence update 2002.10.25
Translated Amino Acid sequence 
**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI
EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK
ETAESKFYSPLTVFREITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFAS
IYQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSII---

---VTELERDIRQLGVSETGLTFLDHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVP
DLKKIPKFQDLTSKDALSPETIQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNI
ANQHLKNFYIIVPALASNYIDHMINSKDKLFKKSKAIGAEALLFTDDGFAIGLAYILKLL
DQNKDFDSLHWFDRIQLKCETDQKRMLAEANAKGIKEDQNHLAIKKIQNFQQEYEL
Translated Amino Acid sequence (All Frames) 
Frame A:
iikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnled
rrsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfk
rnsrk*ilftinsi*rdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sici
dlsitkeytytil*ecsftscllfnd*yifsinkfr*yn---

---w*qswketldnwvsprlv*pf*iildf*slilvmlwvildwsdpvvytivvmlsnsy
qt*krfqnski*pqkmpshlkqfklvpiwiqsfiifqiiyqrvlntlrcw*tfslqsfei
slini*risissylpwpqitsii*sivkinslrnqkqsvlklyyslmmalqlvwlis*ny
*ikikisilfigsivfn*nvklikrecwlkqmqkvskrikii*qlkrfkisnknmny

Frame B:
**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI
EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK
ETAESKFYSPLTVFREITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFAS
IYQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSII---

---gdrvgkrh*tigclrdwfnlfrsf*tfnhsyw*cygly*igqirwftll**cyqirt
rlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*firgy*il*dvgkrfryrvsky
r*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc*sfiih**wlcnwfglylkii
rsk*rfrfsslvrsysiem*n*skenvg*skckryqrgsksfsn*kdskfptri*ii

Frame C:
nkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*
kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*k
kqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhr
sinhkriyihnslrmfiyklsiiq*liyfqy**i*iv*---

---VTELERDIRQLGVSETGLTFLDHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVP
DLKKIPKFQDLTSKDALSPETIQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNI
ANQHLKNFYIIVPALASNYIDHMINSKDKLFKKSKAIGAEALLFTDDGFAIGLAYILKLL
DQNKDFDSLHWFDRIQLKCETDQKRMLAEANAKGIKEDQNHLAIKKIQNFQQEYEL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA389 (SHA389Q) /CSM/SH/SHA3-D/SHA389Q.Seq.d/                       2658   0.0
VHK538 (VHK538Q) /CSM/VH/VHK5-B/VHK538Q.Seq.d/                       1394   0.0
VHB189 (VHB189Q) /CSM/VH/VHB1-D/VHB189Q.Seq.d/                       1394   0.0
SHL542 (SHL542Q) /CSM/SH/SHL5-B/SHL542Q.Seq.d/                       1394   0.0
SHD893 (SHD893Q) /CSM/SH/SHD8-D/SHD893Q.Seq.d/                       1394   0.0
SHD671 (SHD671Q) /CSM/SH/SHD6-C/SHD671Q.Seq.d/                       1394   0.0
CHG465 (CHG465Q) /CSM/CH/CHG4-C/CHG465Q.Seq.d/                       1394   0.0
CHG147 (CHG147Q) /CSM/CH/CHG1-B/CHG147Q.Seq.d/                       1394   0.0
AHL641 (AHL641Q) /CSM/AH/AHL6-B/AHL641Q.Seq.d/                       1394   0.0
AHC187 (AHC187Q) /CSM/AH/AHC1-D/AHC187Q.Seq.d/                       1394   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BU746157|BU746157.1 CH3#002_C07T7 Canine heart normalized cDNA Library in pBluescriptCanis familiaris cDNA clone CH3#002_C07 5', mRNA sequence.    38   7e-04  3
BY464171|BY464171.1 Mus musculus 15 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:K630150M24, 3' end partial sequence.    42   0.026  2
AK113047|AK113047.1 Ciona intestinalis cDNA, clone:ciad002a21, full insert sequence.    48   0.030  2
AC168241|AC168241.1 Bos taurus clone CH240-197K22, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    52   0.032  1
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   0.046  22
BB822673|BB822673.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830022O04, 3' end partial sequence.    32   0.10   4
DN287505|DN287505.1 1241755 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    34   0.12   3
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09.    50   0.13   1
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16.    50   0.13   1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.13   1
dna update 2005.12. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               469   e-130
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   235   2e-60
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   235   3e-60
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   235   3e-60
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...   233   1e-59
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      233   1e-59
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN...   233   1e-59
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   233   1e-59
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   175   3e-42
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746...   171   7e-41
protein update 2009. 4.14
PSORT 

 psg: 0.79  gvh: 0.25  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SHA389 is nuc
5' end seq. ID SHA389F
5' end seq. 
>SHA389F.Seq
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTAGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTNN
NNNNNNNN
Length of 5' end seq. 668
3' end seq. ID SHA389Z
3' end seq. 
>SHA389Z.Seq
NNNNNNNNNNTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACT
GGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGT
TATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTA
CCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCT
GAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTA
TCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAAT
ATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTAC
ATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCT
GAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTA
TTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGT
GAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAA
AATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAATTATT
Length of 3' end seq. 713
Connected seq. ID SHA389P
Connected seq. 
>SHA389P.Seq
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTAGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATT--
--------TGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTGG
TTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTA
TATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACC
AGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGA
AACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATC
AGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATAT
CGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACAT
CGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGA
AGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATT
AGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGA
AACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAA
TCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAATTATT
Length of connected seq. 1361
Full length Seq ID -
Full length Seq. -
Length of full length seq. -