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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA342
Library SH
(Link to library)
Clone ID SHA342
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11927-1|Contig-U13210-1
Original site URL
Representative seq. ID SHA342P
(Link to Original site)
Representative DNA sequence 
>SHA342 (SHA342Q) /CSM/SH/SHA3-B/SHA342Q.Seq.d/
AATTATTCTTAATATTATTCCAAAATTAACAATACAAATTTGTTATAGGGGAAATTGTAT
TAAATAGTAGTCTCATATTTATTTTTTTATAAATCTAATTAATTTAAAAAAAAAAXXXXX
XXXXXTTACCAGCAAAGATTGCAAATATTTTAAAGAAACTTTCCAAAAGATACAAAAAAC
ATTATTTATGTTATTACAAGTAGAGATGCAAGTACCTTTGATAACCTTTTGGAGAATATA
CCAGGTGTTGGGTTAGGTTGTGAACATGGCTCTTTCTTAAAATCATCAACCGGTATTCAT
GGTGGTATTGAAGAATGGCAAAATCTATCAGAGGGTATCGATTTATCATGGAAAGAGATG
GTGGTACCTATATTGGAACATTTCTGTGAACGTATACCAGGTTCATCTTTGGTAGTAAAT
AAAGTGACCGTTGCTTTCTCCTATGAAAATTGTTTCTCTGAATATAGTAGTGAGAATGCT
CAAGAGTTACTCACAACTCTAATGGAAGTAGCTGGTAAAACTCCAATCGATATTTCAAAT
TCAAACAAAGTCATTGAAATTAAACCATCAGGTACCGGTAGTAGTATTGCAATGAAAAAA
GTAATGGAAGAGAATCCTGAAATTGATTTCATGCTTTGTATTGGTGATGAAAAGACTGAA
CAAGGTGTTTTTGACCTATTGGATAGATTAAATCCAAATCATTTCGCTGTTTCCGTAGGT
AAAAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
iilniipkltiqicyrgncik**SHIYFFINLINLKKK---

---TSKDCKYFKETFQKIQKTLFMLLQVEMQVPLITFWRIYQVLG*vvnmals*nhqpvf
mvvlkngkiyqrvsiyhgkrwwylywnisvnvyqvhlw**ik*pllspmkivslnivvrm
lksysql*wk*lvklqsifqiqtkslklnhqvpvvvlq*kk*wkrilkliscfvlvmkrl
nkvfltywid*iqiislfp*vk
Translated Amino Acid sequence (All Frames) 
Frame A:
nys*yyskinntnll*gkly*ivvsylffyksn*fkkk---

---lpakianilkklskrykkhylcyyk*rckyl**pfgeytrcwvrl*twlflkiinry
swwy*rmaksirgyrfimerdggtyigtfl*tytrfifgsk*sdrcfll*klfl*i***e
csrvthnsngssw*nsnryfkfkqsh*n*tiryr**ycneksngres*n*fhalyw**kd
*trcf*pig*iksksfrcfrr*k

Frame B:
iilniipkltiqicyrgncik**SHIYFFINLINLKKK---

---yqqrlqif*rnfpkdtkniiyvitsrdastfdnllenipgvglgcehgsflksstgi
hggieewqnlsegidlswkemvvpilehfceripgsslvvnkvtvafsyencfseyssen
aqellttlmevagktpidisnsnkvieikpsgtgssiamkkvmeenpeidfmlcigdekt
eqgvfdlldrlnpnhfavsvgkk

Frame C:
lflilfqn*qykfvigeivlnsslififl*i*li*kk---

---TSKDCKYFKETFQKIQKTLFMLLQVEMQVPLITFWRIYQVLG*vvnmals*nhqpvf
mvvlkngkiyqrvsiyhgkrwwylywnisvnvyqvhlw**ik*pllspmkivslnivvrm
lksysql*wk*lvklqsifqiqtkslklnhqvpvvvlq*kk*wkrilkliscfvlvmkrl
nkvfltywid*iqiislfp*vk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA342 (SHA342Q) /CSM/SH/SHA3-B/SHA342Q.Seq.d/                       1191   0.0
SHA384 (SHA384Q) /CSM/SH/SHA3-D/SHA384Q.Seq.d/                       1176   0.0
CHQ621 (CHQ621Q) /CSM/CH/CHQ6-A/CHQ621Q.Seq.d/                        991   0.0
SSJ661 (SSJ661Q) /CSM/SS/SSJ6-C/SSJ661Q.Seq.d/                        706   0.0
SHF436 (SHF436Q) /CSM/SH/SHF4-B/SHF436Q.Seq.d/                        668   0.0
SSL866 (SSL866Q) /CSM/SS/SSL8-C/SSL866Q.Seq.d/                        488   e-137
CHK316 (CHK316Q) /CSM/CH/CHK3-A/CHK316Q.Seq.d/                         66   8e-10
VHA432 (VHA432Q) /CSM/VH/VHA4-B/VHA432Q.Seq.d/                         46   7e-04
SSJ689 (SSJ689Q) /CSM/SS/SSJ6-D/SSJ689Q.Seq.d/                         46   7e-04
SHF202 (SHF202Q) /CSM/SH/SHF2-A/SHF202Q.Seq.d/                         46   7e-04
own update 2002.10.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844897|AL844897.5 Mouse DNA sequence from clone RP23-284F8 on chromosome X.    48   0.26   1
AX345937|AX345937.1 Sequence 1008 from Patent WO0200928.           46   0.95   2
AF038615|AF038615.1 Caenorhabditis elegans cosmid R02D3, complete sequence.    38   0.97   3
DN203564|DN203564.1 USDA-FP_139589 5th Instar Glassy-winged Sharpshooter Homalodisca coagulata cDNA clone WHHC5-019_G02 5', mRNA sequence.    46   1.0    1
DN203476|DN203476.1 USDA-FP_139501 5th Instar Glassy-winged Sharpshooter Homalodisca coagulata cDNA clone WHHC5-015_D05 5', mRNA sequence.    46   1.0    1
DN203471|DN203471.1 USDA-FP_139496 5th Instar Glassy-winged Sharpshooter Homalodisca coagulata cDNA clone WHHC5-015_C06 5', mRNA sequence.    46   1.0    1
DN203427|DN203427.1 USDA-FP_139452 5th Instar Glassy-winged Sharpshooter Homalodisca coagulata cDNA clone WHHC5-014_G01 5', mRNA sequence.    46   1.0    1
DN203388|DN203388.1 USDA-FP_139413 5th Instar Glassy-winged Sharpshooter Homalodisca coagulata cDNA clone WHHC5-014_C03 5', mRNA sequence.    46   1.0    1
DN199204|DN199204.1 USDA-FP_135918 5th Instar Glassy-winged Sharpshooter Homalodisca coagulata cDNA clone WHHC5-048_D04 5', mRNA sequence.    46   1.0    1
DN199119|DN199119.1 USDA-FP_135833 5th Instar Glassy-winged Sharpshooter Homalodisca coagulata cDNA clone WHHC5-047_D05 5', mRNA sequence.    46   1.0    1
dna update 2005.12. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NU9) RecName: Full=Alpha,alpha-trehalose-phosphate synthase ...   114   2e-24
AE017342_262(AE017342|pid:none) Cryptococcus neoformans var. neo...   114   3e-24
EU399552_1(EU399552|pid:none) Cryptococcus gattii isolate R265TP...   114   3e-24
BT061172_1(BT061172|pid:none) Zea mays full-length cDNA clone ZM...   105   1e-21
DQ407640_1(DQ407640|pid:none) Acanthamoeba castellanii trehalose...   104   3e-21
AK228947_1(AK228947|pid:none) Arabidopsis thaliana mRNA for puta...   103   5e-21
(Q9LMI0) RecName: Full=Probable alpha,alpha-trehalose-phosphate ...   103   5e-21
AL161547_9(AL161547|pid:none) Arabidopsis thaliana DNA chromosom...   103   5e-21
AC183498_50(AC183498|pid:none) Brassica oleracea, *** SEQUENCING...   102   1e-20
(O14145) RecName: Full=Trehalose-phosphatase;          EC=3.1.3....   101   3e-20
protein update 2009. 4.14
PSORT 

 psg: 0.90  gvh: 0.47  alm: 0.38  top: 0.70  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHA342 is cyt
5' end seq. ID SHA342F
5' end seq. 
>SHA342F.Seq
AATTATTCTTAATATTATTCCAAAATTAACAATACAAATTTGTTATAGGGGAAATTGTAT
TAAATAGTAGTCTCATATTTATTTTTTTATAAATCTAATTAATTTAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 125
3' end seq. ID SHA342Z
3' end seq. 
>SHA342Z.Seq
NNNNNNNNNNTTACCAGCAAAGATTGCAAATATTTTAAAGAAACTTTCCAAAAGATACAA
AAAACATTATTTATGTTATTACAAGTAGAGATGCAAGTACCTTTGATAACCTTTTGGAGA
ATATACCAGGTGTTGGGTTAGGTTGTGAACATGGCTCTTTCTTAAAATCATCAACCGGTA
TTCATGGTGGTATTGAAGAATGGCAAAATCTATCAGAGGGTATCGATTTATCATGGAAAG
AGATGGTGGTACCTATATTGGAACATTTCTGTGAACGTATACCAGGTTCATCTTTGGTAG
TAAATAAAGTGACCGTTGCTTTCTCCTATGAAAATTGTTTCTCTGAATATAGTAGTGAGA
ATGCTCAAGAGTTACTCACAACTCTAATGGAAGTAGCTGGTAAAACTCCAATCGATATTT
CAAATTCAAACAAAGTCATTGAAATTAAACCATCAGGTACCGGTAGTAGTATTGCAATGA
AAAAAGTAATGGAAGAGAATCCTGAAATTGATTTCATGCTTTGTATTGGTGATGAAAAGA
CTGAACAAGGTGTTTTTGACCTATTGGATAGATTAAATCCAAATCATTTCGCTGTTTCCG
TAGGTAAAAAG
Length of 3' end seq. 611
Connected seq. ID SHA342P
Connected seq. 
>SHA342P.Seq
AATTATTCTTAATATTATTCCAAAATTAACAATACAAATTTGTTATAGGGGAAATTGTAT
TAAATAGTAGTCTCATATTTATTTTTTTATAAATCTAATTAATTTAAAAAAAAAA-----
-----TTACCAGCAAAGATTGCAAATATTTTAAAGAAACTTTCCAAAAGATACAAAAAAC
ATTATTTATGTTATTACAAGTAGAGATGCAAGTACCTTTGATAACCTTTTGGAGAATATA
CCAGGTGTTGGGTTAGGTTGTGAACATGGCTCTTTCTTAAAATCATCAACCGGTATTCAT
GGTGGTATTGAAGAATGGCAAAATCTATCAGAGGGTATCGATTTATCATGGAAAGAGATG
GTGGTACCTATATTGGAACATTTCTGTGAACGTATACCAGGTTCATCTTTGGTAGTAAAT
AAAGTGACCGTTGCTTTCTCCTATGAAAATTGTTTCTCTGAATATAGTAGTGAGAATGCT
CAAGAGTTACTCACAACTCTAATGGAAGTAGCTGGTAAAACTCCAATCGATATTTCAAAT
TCAAACAAAGTCATTGAAATTAAACCATCAGGTACCGGTAGTAGTATTGCAATGAAAAAA
GTAATGGAAGAGAATCCTGAAATTGATTTCATGCTTTGTATTGGTGATGAAAAGACTGAA
CAAGGTGTTTTTGACCTATTGGATAGATTAAATCCAAATCATTTCGCTGTTTCCGTAGGT
AAAAAG
Length of connected seq. 716
Full length Seq ID -
Full length Seq. -
Length of full length seq. -