SHA333
Library SH
(Link to library)
Clone ID SHA333
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11097-1
Original site URL
Representative seq. ID SHA333P
(Link to Original site)
Representative DNA sequence
>SHA333 (SHA333Q) /CSM/SH/SHA3-B/SHA333Q.Seq.d/
ATAAAGATGCAATTCAACTTGAATATAAAGATACAAAGATTGGAGAATCATTTGGACCAT
CATGGACAAATTATTGGTTTAAAGTTACAATTGACGTACCAACTGATTGGAAAGATAAAA
CTATTCATTTCATTTGGAATTCATCTTGTGAAGGTTTAATTTGGATGAATGGTATTGCAA
TTCAAGGTTTAATTGGTGGAACATGGCAAGATTTAAGAGAAGAATATAAATTAATTGAAA
ATTCAAAAGGTGGAGAACATTTTGAATTTTATATTGAAATTTCATGTAATGGTATGTTTG
GAGTTGGTAAGGATGGATTAATTAATCCATGTGATCCAGATAGAACATTTGAATTGACTA
AAGCAGAGATTAGAGTAAAGAATAAAGAAGCCAATGAATTGTATATGTATCTTCAAATGT
TATATGATGTTGGTAAGAATTTCCCAAAGGAATCATTAAGAAAGAAACAAGCAATTTGGG
TGGCCAATGATATCATTAACCAATGTAATGTAAATGATTCAAGAACATTTTCAAAATGTA
TTGAAXXXXXXXXXXTGATTTCGAAACCAATGTCAATTGGAATGAAGCTCATAAACTATT
GAGAGTCGATTTCGATACCAATATTAGAGCAAAGAATGCAAATTATGAAATTCAATTTGG
TCATATCGAACGTCCAACTCATTATAACACAAGTTGGGATTTCGCAAGATTTGAAGTTGT
CGGACATAAATGGGCCGATCTTAGTGAATATGATTTTGGTATGGCATTATTGAACGATTG
TAAATATGGTTACTCAACATTAGGTGGTCGTATTGGTTTATCATTACTAAGATCACCAAA
ATCACCCGATGATACTTGTGATATGGGTTCTCATAAATTCACCTACTCAATTTATCCACA
TCGTGGTTCACTTCAATCTGCCTCCGTCATTAAAGAAGGCTATTCATTAAATAATAACTT
TTATATCAGTGAAACACCATTCTCTTTAGCTTCTACAACTCATATCGATAAAACTTTTAT
CTCAACAAATAAAGAAGCCATCATTGTTGATACAATTAAAAAAGCTGAAGATGGCACCTC
TTTTGTTGTGCGTGTTTATGAATCTTTTGGTGGTGCCACTACTTTTAACTTTACATCTTC
AATCCTTCCAATTCCATTCAAATCAATCATTGAATGTAATGGTCTTGAAGAAGTTAATCA
ATCTTCAAAATCTTATAAATTTAATGATACAATTAAAATTAATCCATTTGAAATCAAAAC
TTTTAGATTTATTTCAAATTAAAAATTAAAAATAAAATTAATAAATAAATATAAAAATAA
ATTTAACA
sequence update 2002.10.25
Translated Amino Acid sequence
KDAIQLEYKDTKIGESFGPSWTNYWFKVTIDVPTDWKDKTIHFIWNSSCEGLIWMNGIAI
QGLIGGTWQDLREEYKLIENSKGGEHFEFYIEISCNGMFGVGKDGLINPCDPDRTFELTK
AEIRVKNKEANELYMYLQMLYDVGKNFPKESLRKKQAIWVANDIINQCNVNDSRTFSKCI
E---

---DFETNVNWNEAHKLLRVDFDTNIRAKNANYEIQFGHIERPTHYNTSWDFARFEVVGH
KWADLSEYDFGMALLNDCKYGYSTLGGRIGLSLLRSPKSPDDTCDMGSHKFTYSIYPHRG
SLQSASVIKEGYSLNNNFYISETPFSLASTTHIDKTFISTNKEAIIVDTIKKAEDGTSFV
VRVYESFGGATTFNFTSSILPIPFKSIIECNGLEEVNQSSKSYKFNDTIKINPFEIKTFR
FISN*klkiklinkyknkfn


Translated Amino Acid sequence (All Frames)
Frame A:
ikmqfnlnikiqrlenhldhhgqiiglklqltyqligkiklfisfgihlvkv*fg*mvlq
fkv*lvehgki*eknin*lkiqkvenilnfilkfhvmvclelvrmd*lihviqiehln*l
kqrle*rikkpmncicifkcymmlvrisqrnh*ernkqfgwpmisltnvm*miqehfqnv
l---

---*frnqcqle*ss*tiesrfryqy*skeckl*nsiwsyrtsnsl*hklgfrki*scrt
*mgrs**i*fwygiierl*iwllnirwsywfiitkitkitr*yl*ygfs*ihllnlstsw
ftsiclrh*rrlfik**llyq*ntilfsfynsyr*nfylnk*rshhc*yn*ks*rwhlfc
cacl*ifwwchyf*lyifnpsnsiqinh*m*ws*rs*sifkil*i**yn*n*si*nqnf*
iyfklkiknkink*i*k*i*

Frame B:
*rcnst*i*rykdwriiwtimdkllv*syn*rtn*ler*nysfhlefil*rfnldewycn
srfnwwnmarfkrri*in*kfkrwrtf*ily*nfm*wyvwsw*gwin*sm*sr*ni*id*
srd*ske*rsq*ivyvssnvi*cw*efpkgiikketsnlggq*yh*pm*ck*fknifkmy
*---

---DFETNVNWNEAHKLLRVDFDTNIRAKNANYEIQFGHIERPTHYNTSWDFARFEVVGH
KWADLSEYDFGMALLNDCKYGYSTLGGRIGLSLLRSPKSPDDTCDMGSHKFTYSIYPHRG
SLQSASVIKEGYSLNNNFYISETPFSLASTTHIDKTFISTNKEAIIVDTIKKAEDGTSFV
VRVYESFGGATTFNFTSSILPIPFKSIIECNGLEEVNQSSKSYKFNDTIKINPFEIKTFR
FISN*klkiklinkyknkfn

Frame C:
KDAIQLEYKDTKIGESFGPSWTNYWFKVTIDVPTDWKDKTIHFIWNSSCEGLIWMNGIAI
QGLIGGTWQDLREEYKLIENSKGGEHFEFYIEISCNGMFGVGKDGLINPCDPDRTFELTK
AEIRVKNKEANELYMYLQMLYDVGKNFPKESLRKKQAIWVANDIINQCNVNDSRTFSKCI
E---

---iskpmsigmkliny*esisipileqrmqimkfnlvisnvqliitqvgisqdlklsdi
ngpilvnmilvwhy*tivnmvtqh*vvvlvyhy*dhqnhpmilviwvlinsptqfihivv
hfnlppslkkaih*iitfisvkhhsl*llqlisikllsqqikkpslliqlkklkmaplll
cvfmnllvvpllltlhlqsfqfhsnqslnvmvlkklinlqnlinlmiqlklihlksklld
lfqikn*k*n**inikinlt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHA333 (SHA333Q) /CSM/SH/SHA3-B/SHA333Q.Seq.d/ 2468 0.0
CHQ611 (CHQ611Q) /CSM/CH/CHQ6-A/CHQ611Q.Seq.d/ 1427 0.0
AHR366 (AHR366Q) /CSM/AH/AHR3-C/AHR366Q.Seq.d/ 1427 0.0
AHL346 (AHL346Q) /CSM/AH/AHL3-B/AHL346Q.Seq.d/ 1427 0.0
AHN834 (AHN834Q) /CSM/AH/AHN8-B/AHN834Q.Seq.d/ 1423 0.0
AHM290 (AHM290Q) /CSM/AH/AHM2-D/AHM290Q.Seq.d/ 1419 0.0
AHK633 (AHK633Q) /CSM/AH/AHK6-B/AHK633Q.Seq.d/ 1417 0.0
AHO643 (AHO643Q) /CSM/AH/AHO6-B/AHO643Q.Seq.d/ 1415 0.0
AHO450 (AHO450Q) /CSM/AH/AHO4-C/AHO450Q.Seq.d/ 1413 0.0
AHQ414 (AHQ414Q) /CSM/AH/AHQ4-A/AHQ414Q.Seq.d/ 1411 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 56 0.002 1
BI678931|BI678931.1 SWS931 SWS (Sapwood of black locust - Summer) Robinia pseudoacacia cDNA, mRNA sequence. 50 0.12 1
CZ979288|CZ979288.1 192655 Tomato MboI BAC Library Lycopersicon esculentum genomic clone SL_MboI0063O17 3, genomic survey sequence. 40 0.38 3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 0.41 9
AC164036|AC164036.3 Bos taurus clone CH240-131M24, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces. 48 0.48 1
AC152790|AC152790.3 Bos taurus clone CH240-14N11, WORKING DRAFT SEQUENCE, 15 unordered pieces. 48 0.48 1
DU307294|DU307294.1 1098473556096 CHORI-243 Ovis aries genomic clone CH243-138E9, genomic survey sequence. 48 0.48 1
AC103726|AC103726.5 Homo sapiens chromosome 8, clone RP11-737F9, complete sequence. 36 0.95 6
AL590012|AL590012.6 Human DNA sequence from clone RP11-40I8 on chromosome X. 44 1.4 5
CL547071|CL547071.1 OB__Ba0080B11.f OB__Ba Oryza brachyantha genomic clone OB__Ba0080B11 5', genomic survey sequence. 38 1.7 2
dna update 2005.12. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54K67) RecName: Full=Alpha-mannosidase G; EC=3.2.1.24; 468 e-130
AE017262_2020(AE017262|pid:none) Listeria monocytogenes str. 4b ... 192 2e-47
AG1326(AG1326) alpha-mannosidase homolog lmo2015 [imported] - Li... 192 3e-47
(Q9NTJ4) RecName: Full=Alpha-mannosidase 2C1; EC=3.2.1.... 191 4e-47
AM263198_2035(AM263198|pid:none) Listeria welshimeri serovar 6b ... 190 1e-46
U37248_1(U37248|pid:none) Homo sapiens alpha-mannosidase (6A8) m... 189 1e-46
AF044414_1(AF044414|pid:none) Homo sapiens alpha mannosidase 6A8... 189 1e-46
BC127332_1(BC127332|pid:none) Xenopus tropicalis hypothetical pr... 187 9e-46
AK049370_1(AK049370|pid:none) Mus musculus ES cells cDNA, RIKEN ... 186 1e-45
(Q91W89) RecName: Full=Alpha-mannosidase 2C1; EC=3.2.1.... 186 1e-45
protein update 2009. 4.14
PSORT

psg: 0.75 gvh: 0.37 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal

>> prediction for SHA333 is cyt

5' end seq. ID SHA333F
5' end seq.
>SHA333F.Seq
ATAAAGATGCAATTCAACTTGAATATAAAGATACAAAGATTGGAGAATCATTTGGACCAT
CATGGACAAATTATTGGTTTAAAGTTACAATTGACGTACCAACTGATTGGAAAGATAAAA
CTATTCATTTCATTTGGAATTCATCTTGTGAAGGTTTAATTTGGATGAATGGTATTGCAA
TTCAAGGTTTAATTGGTGGAACATGGCAAGATTTAAGAGAAGAATATAAATTAATTGAAA
ATTCAAAAGGTGGAGAACATTTTGAATTTTATATTGAAATTTCATGTAATGGTATGTTTG
GAGTTGGTAAGGATGGATTAATTAATCCATGTGATCCAGATAGAACATTTGAATTGACTA
AAGCAGAGATTAGAGTAAAGAATAAAGAAGCCAATGAATTGTATATGTATCTTCAAATGT
TATATGATGTTGGTAAGAATTTCCCAAAGGAATCATTAAGAAAGAAACAAGCAATTTGGG
TGGCCAATGATATCATTAACCAATGTAATGTAAATGATTCAAGAACATTTTCAAAATGTA
TTGAANNNNNNNNNN
Length of 5' end seq. 555
3' end seq. ID SHA333Z
3' end seq.
>SHA333Z.Seq
NNNNNNNNNNTGATTTCGAAACCAATGTCAATTGGAATGAAGCTCATAAACTATTGAGAG
TCGATTTCGATACCAATATTAGAGCAAAGAATGCAAATTATGAAATTCAATTTGGTCATA
TCGAACGTCCAACTCATTATAACACAAGTTGGGATTTCGCAAGATTTGAAGTTGTCGGAC
ATAAATGGGCCGATCTTAGTGAATATGATTTTGGTATGGCATTATTGAACGATTGTAAAT
ATGGTTACTCAACATTAGGTGGTCGTATTGGTTTATCATTACTAAGATCACCAAAATCAC
CCGATGATACTTGTGATATGGGTTCTCATAAATTCACCTACTCAATTTATCCACATCGTG
GTTCACTTCAATCTGCCTCCGTCATTAAAGAAGGCTATTCATTAAATAATAACTTTTATA
TCAGTGAAACACCATTCTCTTTAGCTTCTACAACTCATATCGATAAAACTTTTATCTCAA
CAAATAAAGAAGCCATCATTGTTGATACAATTAAAAAAGCTGAAGATGGCACCTCTTTTG
TTGTGCGTGTTTATGAATCTTTTGGTGGTGCCACTACTTTTAACTTTACATCTTCAATCC
TTCCAATTCCATTCAAATCAATCATTGAATGTAATGGTCTTGAAGAAGTTAATCAATCTT
CAAAATCTTATAAATTTAATGATACAATTAAAATTAATCCATTTGAAATCAAAACTTTTA
GATTTATTTCAAATTAAAAATTAAAAATAAAATTAATAAATAAATATAAAAATAAATTTA
ACA
Length of 3' end seq. 783
Connected seq. ID SHA333P
Connected seq.
>SHA333P.Seq
ATAAAGATGCAATTCAACTTGAATATAAAGATACAAAGATTGGAGAATCATTTGGACCAT
CATGGACAAATTATTGGTTTAAAGTTACAATTGACGTACCAACTGATTGGAAAGATAAAA
CTATTCATTTCATTTGGAATTCATCTTGTGAAGGTTTAATTTGGATGAATGGTATTGCAA
TTCAAGGTTTAATTGGTGGAACATGGCAAGATTTAAGAGAAGAATATAAATTAATTGAAA
ATTCAAAAGGTGGAGAACATTTTGAATTTTATATTGAAATTTCATGTAATGGTATGTTTG
GAGTTGGTAAGGATGGATTAATTAATCCATGTGATCCAGATAGAACATTTGAATTGACTA
AAGCAGAGATTAGAGTAAAGAATAAAGAAGCCAATGAATTGTATATGTATCTTCAAATGT
TATATGATGTTGGTAAGAATTTCCCAAAGGAATCATTAAGAAAGAAACAAGCAATTTGGG
TGGCCAATGATATCATTAACCAATGTAATGTAAATGATTCAAGAACATTTTCAAAATGTA
TTGAA----------TGATTTCGAAACCAATGTCAATTGGAATGAAGCTCATAAACTATT
GAGAGTCGATTTCGATACCAATATTAGAGCAAAGAATGCAAATTATGAAATTCAATTTGG
TCATATCGAACGTCCAACTCATTATAACACAAGTTGGGATTTCGCAAGATTTGAAGTTGT
CGGACATAAATGGGCCGATCTTAGTGAATATGATTTTGGTATGGCATTATTGAACGATTG
TAAATATGGTTACTCAACATTAGGTGGTCGTATTGGTTTATCATTACTAAGATCACCAAA
ATCACCCGATGATACTTGTGATATGGGTTCTCATAAATTCACCTACTCAATTTATCCACA
TCGTGGTTCACTTCAATCTGCCTCCGTCATTAAAGAAGGCTATTCATTAAATAATAACTT
TTATATCAGTGAAACACCATTCTCTTTAGCTTCTACAACTCATATCGATAAAACTTTTAT
CTCAACAAATAAAGAAGCCATCATTGTTGATACAATTAAAAAAGCTGAAGATGGCACCTC
TTTTGTTGTGCGTGTTTATGAATCTTTTGGTGGTGCCACTACTTTTAACTTTACATCTTC
AATCCTTCCAATTCCATTCAAATCAATCATTGAATGTAATGGTCTTGAAGAAGTTAATCA
ATCTTCAAAATCTTATAAATTTAATGATACAATTAAAATTAATCCATTTGAAATCAAAAC
TTTTAGATTTATTTCAAATTAAAAATTAAAAATAAAATTAATAAATAAATATAAAAATAA
ATTTAACA
Length of connected seq. 1318
Full length Seq ID -
Full length Seq. -
Length of full length seq. -