NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA313
Library SH
(Link to library)
Clone ID SHA313
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID SHA313P
(Link to Original site)
Representative DNA sequence 
>SHA313 (SHA313Q) /CSM/SH/SHA3-A/SHA313Q.Seq.d/
TGTACTGTTGATTCTTGCGATGACTTAACTGGTTGTTGCAATACTCCAATCAATGTTGAT
GATAATAATCCATGTACCATCGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCA
GTCAATGTAGATGATAATAACAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTA
ACTCATACTCCAGTCAATACTGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCA
TCAACTGGTGTTTCCCATACCCCAATAAACTGTGATGATAATAATAAATGTACTGTAGAT
TCATGTTCAAACTCAACTGGTTGTGTAAATACTCCAATTAACTGTGACGATAGTAATCCA
TGTACCGTAGACTCATGCANTAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGAT
GATAATAATCCATGTACCGTCGATGCCTGTACCAAATCAACAGGTGTTACTCATACCCCA
GTCAATGTAGATGATAACAACAAATGTACAATTGATGCATGTACCAAAGAAGGTGGTGTA
ACTCATACCCCAGTCAATACTGATGATAACAATGCCTGTACAATTGATGCATGTACAAAA
GAAGGTGGTGTAACTCATACTCCAATCAATACTGATGATAACAATGCTTGTACCCTTGAC
TCCTGTTCNCCATCAACTGGCGTTNCCCCACACCCCCATTAACTGNGGATGATAGTAAAT
CCATGTACCCGTANAACTCATGTTTCNAATTCAACCGGGTTGTTGGCNCCCCTCCAATNA
ATGGTGGATGATAAAAATCCATGTACTGTANATTCCTGGTACCAACCCACNGGNGTCCCN
ATACCCCCATTNATGGTNNATGATAAXXXXXXXXXXTTAANTTNATNTNTGGNTTAANTG
GNGGTTTCNNTGGNGGNGGGACAGGANGNAAANGTGATTGCNAAACNTGNAAAAANTNAA
NAACNCNTTTTANTTAATTANATTTTAAAAAAATTCNAAAAAAATTCNAAAAAAAATTCN
AGAAAAAAAAAAAACTATTTGTTTTCTTATCTAATATTTATAATTTTTAAAAATAAAAAT
TCAT
sequence update 2002.10.25
Translated Amino Acid sequence 
ctvdscddltgccntpinvddnnpctidactkstgvthtpvnvddnnkctidtctkeggv
thtpvntddnnactldscspstgvshtpincddnnkctvdscsnstgcvntpincddsnp
ctvdscxnstgcvntpvnvddnnpctvdactkstgvthtpvnvddnnkctidactkeggv
thtpvntddnnactidactkeggvthtpintddnnactldscspstgvxphph*LXMIVN
PCTRXTHVSNSTGLLAPLQXMVDDKNPCTVXSWYQPTGVPIPPXMVXD---

---XXXXGLXGGFXGGGTGXKXDCXTXKXXXTXFX*lxfkkixkkfxkkfxkkkklfvfl
sniynf*k*kf
Translated Amino Acid sequence (All Frames) 
Frame A:
ctvdscddltgccntpinvddnnpctidactkstgvthtpvnvddnnkctidtctkeggv
thtpvntddnnactldscspstgvshtpincddnnkctvdscsnstgcvntpincddsnp
ctvdscxnstgcvntpvnvddnnpctvdactkstgvthtpvnvddnnkctidactkeggv
thtpvntddnnactidactkeggvthtpintddnnactldscspstgvxphph*LXMIVN
PCTRXTHVSNSTGLLAPLQXMVDDKNPCTVXSWYQPTGVPIPPXMVXD---

---lxxxxx*xxvsxxxgqxxxviakxxkxxxxxlxnxilkkfxknskknsrkkknylfs
ylifiifknkns

Frame B:
vllilamt*lvvailqsmlmiiihvpsmpvlnqqvllipqsm*miitnvqlihvpkkvv*
lilqsilmitmpvplipahhqlvfpipq*tvmiiinvl*ihvqtqlvv*ilqltvtivih
vp*thaxiqlvv*tlqsmlmiiihvpsmpvpnqqvllipqsm*mittnvqlmhvpkkvv*
lipqsilmitmpvqlmhvqkkvv*lilqsilmitmlvpltpvxhqlaxphtpinxg***i
hvpvxlmfxiqpgcwxpsnxwwmikihvlxipgtnpxxsxyphxwxmi---

---*xxxwxxwxfxwxxdrxxx*lxnxxkxxnxfxlixf*knskkixkkixekkkticfl
i*yl*flkikih

Frame C:
yc*flr*lnwllqysnqc****smyhrcly*inrcysypsqcr***qmyn*ymyqrrwcn
syssqy***qclyp*flltinwcfpypnkl*****mycrfmfklnwlckysn*l*r**sm
yrrlmx*fnwlckhssqc****smyrrclyqinrcysypsqcr**qqmyn*cmyqrrwcn
sypsqy***qclyn*cmykrrwcnsysnqy***qclyp*llfxinwrxptppltxddsks
mypxnscfxfnrvvgxppxngg**ksmycxflvpthxxpxtpixgx**---

---XXXXGLXGGFXGGGTGXKXDCXTXKXXXTXFX*lxfkkixkkfxkkfxkkkklfvfl
sniynf*k*kf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA313 (SHA313Q) /CSM/SH/SHA3-A/SHA313Q.Seq.d/                       1663   0.0
SHF321 (SHF321Q) /CSM/SH/SHF3-A/SHF321Q.Seq.d/                       1342   0.0
SHC589 (SHC589Q) /CSM/SH/SHC5-D/SHC589Q.Seq.d/                       1312   0.0
CHR684 (CHR684Q) /CSM/CH/CHR6-D/CHR684Q.Seq.d/                       1306   0.0
SHK502 (SHK502Q) /CSM/SH/SHK5-A/SHK502Q.Seq.d/                       1294   0.0
SHA152 (SHA152Q) /CSM/SH/SHA1-C/SHA152Q.Seq.d/                       1281   0.0
SHG549 (SHG549Q) /CSM/SH/SHG5-C/SHG549Q.Seq.d/                       1245   0.0
SHF556 (SHF556Q) /CSM/SH/SHF5-C/SHF556Q.Seq.d/                       1231   0.0
CHN682 (CHN682Q) /CSM/CH/CHN6-D/CHN682Q.Seq.d/                       1213   0.0
SHA109 (SHA109Q) /CSM/SH/SHA1-A/SHA109Q.Seq.d/                       1174   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               52   4e-19  4
CK991559|CK991559.1 EST0111 Eyestalk cDNA library Penaeus monodon cDNA clone ES-N-S03-555-W 5' similar to Histidine-rich glycoprotein precursor (Plasmodium lophurae), mRNA sequence.    30   6e-05  5
BX231032|BX231032.1 Danio rerio genomic clone DKEY-254O18, genomic survey sequence.    30   0.022  5
CD720585|CD720585.1 VVB173G04_413077 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB173G04 5, mRNA sequence.    50   0.099  1
CD009159|CD009159.1 VVB105A09_339837 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB105A09 5, mRNA sequence.    50   0.099  1
CD006363|CD006363.1 VVB058C12_327280 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB058C12 5, mRNA sequence.    50   0.099  1
CD005900|CD005900.1 VVB060E01_326354 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB060E01 5, mRNA sequence.    50   0.099  1
AC126218|AC126218.2 Rattus norvegicus clone CH230-9I14, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.099  1
AC111461|AC111461.5 Rattus norvegicus clone CH230-213C21, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50   0.099  1
AC091167|AC091167.19 Homo sapiens chromosome 15 clone RP11-697E2 map 15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    50   0.099  1
dna update 2005.12. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   372   e-101
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   357   5e-97
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   354   2e-96
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   318   3e-85
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   261   3e-68
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   256   1e-66
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                132   3e-29
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                120   8e-26
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                117   5e-25
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   104   6e-21
protein update 2009. 4.14
PSORT 

 psg: 0.88  gvh: 0.46  alm: 0.53  top: 0.57  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SHA313 is mit
5' end seq. ID SHA313F
5' end seq. 
>SHA313F.Seq
TGTACTGTTGATTCTTGCGATGACTTAACTGGTTGTTGCAATACTCCAATCAATGTTGAT
GATAATAATCCATGTACCATCGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCA
GTCAATGTAGATGATAATAACAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTA
ACTCATACTCCAGTCAATACTGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCA
TCAACTGGTGTTTCCCATACCCCAATAAACTGTGATGATAATAATAAATGTACTGTAGAT
TCATGTTCAAACTCAACTGGTTGTGTAAATACTCCAATTAACTGTGACGATAGTAATCCA
TGTACCGTAGACTCATGCANTAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGAT
GATAATAATCCATGTACCGTCGATGCCTGTACCAAATCAACAGGTGTTACTCATACCCCA
GTCAATGTAGATGATAACAACAAATGTACAATTGATGCATGTACCAAAGAAGGTGGTGTA
ACTCATACCCCAGTCAATACTGATGATAACAATGCCTGTACAATTGATGCATGTACAAAA
GAAGGTGGTGTAACTCATACTCCAATCAATACTGATGATAACAATGCTTGTACCCTTGAC
TCCTGTTCNCCATCAACTGGCGTTNCCCCACACCCCCATTAACTGNGGATGATAGTAAAT
CCATGTACCCGTANAACTCATGTTTCNAATTCAACCGGGTTGTTGGCNCCCCTCCAATNA
ATGGTGGATGATAAAAATCCATGTACTGTANATTCCTGGTACCAACCCACNGGNGTCCCN
ATACCCCCATTNATGGTNNATGATAANNNNNNNNNN
Length of 5' end seq. 876
3' end seq. ID SHA313Z
3' end seq. 
>SHA313Z.Seq
NNNNNNNNNNTTAANTTNATNTNTGGNTTAANTGGNGGTTTCNNTGGNGGNGGGACAGGA
NGNAAANGTGATTGCNAAACNTGNAAAAANTNAANAACNCNTTTTANTTAATTANATTTT
AAAAAAATTCNAAAAAAATTCNAAAAAAAATTCNAGAAAAAAAAAAAACTATTTGTTTTC
TTATCTAATATTTATAATTTTTAAAAATAAAAATTCAT
Length of 3' end seq. 218
Connected seq. ID SHA313P
Connected seq. 
>SHA313P.Seq
TGTACTGTTGATTCTTGCGATGACTTAACTGGTTGTTGCAATACTCCAATCAATGTTGAT
GATAATAATCCATGTACCATCGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCA
GTCAATGTAGATGATAATAACAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTA
ACTCATACTCCAGTCAATACTGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCA
TCAACTGGTGTTTCCCATACCCCAATAAACTGTGATGATAATAATAAATGTACTGTAGAT
TCATGTTCAAACTCAACTGGTTGTGTAAATACTCCAATTAACTGTGACGATAGTAATCCA
TGTACCGTAGACTCATGCANTAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGAT
GATAATAATCCATGTACCGTCGATGCCTGTACCAAATCAACAGGTGTTACTCATACCCCA
GTCAATGTAGATGATAACAACAAATGTACAATTGATGCATGTACCAAAGAAGGTGGTGTA
ACTCATACCCCAGTCAATACTGATGATAACAATGCCTGTACAATTGATGCATGTACAAAA
GAAGGTGGTGTAACTCATACTCCAATCAATACTGATGATAACAATGCTTGTACCCTTGAC
TCCTGTTCNCCATCAACTGGCGTTNCCCCACACCCCCATTAACTGNGGATGATAGTAAAT
CCATGTACCCGTANAACTCATGTTTCNAATTCAACCGGGTTGTTGGCNCCCCTCCAATNA
ATGGTGGATGATAAAAATCCATGTACTGTANATTCCTGGTACCAACCCACNGGNGTCCCN
ATACCCCCATTNATGGTNNATGATAA----------TTAANTTNATNTNTGGNTTAANTG
GNGGTTTCNNTGGNGGNGGGACAGGANGNAAANGTGATTGCNAAACNTGNAAAAANTNAA
NAACNCNTTTTANTTAATTANATTTTAAAAAAATTCNAAAAAAATTCNAAAAAAAATTCN
AGAAAAAAAAAAAACTATTTGTTTTCTTATCTAATATTTATAATTTTTAAAAATAAAAAT
TCAT
Length of connected seq. 1074
Full length Seq ID -
Full length Seq. -
Length of full length seq. -