>SHA301 (SHA301Q) /CSM/SH/SHA3-A/SHA301Q.Seq.d/
XXXXXXXXXXTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA
AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA
AAAATCAATTAAAAAATATTCAACATGAACAACAAATCCNAG

---PERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIX

Frame A:
---PERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIX


Frame B:
---qrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksx


Frame C:
---reti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        767   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        767   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        767   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        767   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        767   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        767   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        767   0.0
SHL546 (SHL546Q) /CSM/SH/SHL5-B/SHL546Q.Seq.d/                        767   0.0
SHL383 (SHL383Q) /CSM/SH/SHL3-D/SHL383Q.Seq.d/                        767   0.0
SHL366 (SHL366Q) /CSM/SH/SHL3-C/SHL366Q.Seq.d/                        767   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   767   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.025  7
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X.    36   0.055  7
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    38   0.23   11
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.25   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.25   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.25   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.25   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.25   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   311   2e-83
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.25
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.33
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.43
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.56
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    37   0.73
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    36   1.2
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.2
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    35   1.6
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.6

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHA301 is nuc

>SHA301Z.Seq
NNNNNNNNNNTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA
AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA
AAAATCAATTAAAAAATATTCAACATGAACAACAAATCCNAG