SHA256
Library SH
(Link to library)
Clone ID SHA256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID SHA256P
(Link to Original site)
Representative DNA sequence
>SHA256 (SHA256Q) /CSM/SH/SHA2-C/SHA256Q.Seq.d/
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTGCATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
ANGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCANA
AATATGTCTGTTATNGCTCATGTNGATCATGGTAAAACTACTCTTACTGATTCATTAATT
CAAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGT
CCANATGAACAATTACGNGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAA
ANGCCAAAAGXXXXXXXXXXTCTACATGAAATCTGAACCCATTATCGTCAGACCTAACTG
ATGATATTGATAATGGTTTGGTGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATC
TCTATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAG
AATATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGGTGTTCAATATCTTCATGAA
ATTAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGT
GAGAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATT
CATAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTA
TCAGCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGT
GGTATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAA
CGTCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTT
GGTCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTT
GATCATTGGAGTTCAATTGGTATCGTTGGTCAAGANAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
visiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKK
XVNFTIDQIRSIMDRRENIXNMSVXAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCR
PXEQLRGITIKSSSVSLHFEXPK---

---YMKSEPIIVRPN**y**wfggf*src*kscqlsl**tflg*e*cs*hlviwsri*gs
kcfs*qnqrvfnifmklktlwfqhsngsqmkvyyvvrk*drfvstfmm*cfmpmqfievv
vnlfqqlvv*cmppnyqlnqhfwnqciwlilvllkvvlvvstlysiveevlslvknvvlv
lhysisklifl*wnhlvslliyvqvllvklslnvfliigvqlvslvkxkk


Translated Amino Acid sequence (All Frames)
Frame A:
visiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKK
XVNFTIDQIRSIMDRRENIXNMSVXAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCR
PXEQLRGITIKSSSVSLHFEXPK---

---st*nlnplssdltddidnglvafnqdvksranylydkhswdkndavniwsfgpeykg
pnvlvnktkgcsiss*n*rlygfsipmdlk*rcimw*eneidsfqrl*cnascrcns*r*
wsiysnnsscnvclptisstntfgtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsyw
ysiiqyqslsscngiiwshc*ftfkycwssfpsmcf*slefnwyrwsrxk

Frame B:
syq**illhiqnkinkt*tlffpcigqtliclctiilfkllllkfilktliskktktkkk
xsilq*ikfvqlwivxkisxicllxlmximvkllllih*fkelvllxirylvmqdichvv
xmnnyxvlp*shhlfhftlkxqk---

---lhei*thyrqt*lmilimvwwllikmlkvvpiisminilgirmmqltfghlvqnirv
qmf*ltkpkgvqylheikdsmvsafqwisnegvlcgekmrsirfnvydvmlhadaihrgs
gqfipttrrvmyasqlsaqptllepmylvdistpesgisgiysvlnrrrgvvigeerrig
tplfnikaylpvmesfgltadlrsstagqafpqcvfdhwssigivgqxkk

Frame C:
hinnkyyyiyktkliklklyfspalakl*fafvqlfslnsyy*nsf*klsflkklkqkkx
gqfynrsnsfnygssxkyxkyvcyxscxsw*nysy*finskswyycx*giw*criyvmss
x*titxyyhkviicftsl*xak---

---YMKSEPIIVRPN**y**wfggf*src*kscqlsl**tflg*e*cs*hlviwsri*gs
kcfs*qnqrvfnifmklktlwfqhsngsqmkvyyvvrk*drfvstfmm*cfmpmqfievv
vnlfqqlvv*cmppnyqlnqhfwnqciwlilvllkvvlvvstlysiveevlslvknvvlv
lhysisklifl*wnhlvslliyvqvllvklslnvfliigvqlvslvkxkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHA256 (SHA256Q) /CSM/SH/SHA2-C/SHA256Q.Seq.d/ 1742 0.0
VHJ795 (VHJ795Q) /CSM/VH/VHJ7-D/VHJ795Q.Seq.d/ 1711 0.0
VHB364 (VHB364Q) /CSM/VH/VHB3-C/VHB364Q.Seq.d/ 1338 0.0
AHM516 (AHM516Q) /CSM/AH/AHM5-A/AHM516Q.Seq.d/ 1338 0.0
AHB514 (AHB514Q) /CSM/AH/AHB5-A/AHB514Q.Seq.d/ 1338 0.0
AHD146 (AHD146Q) /CSM/AH/AHD1-B/AHD146Q.Seq.d/ 1336 0.0
AHB739 (AHB739Q) /CSM/AH/AHB7-B/AHB739Q.Seq.d/ 1336 0.0
VHP840 (VHP840Q) /CSM/VH/VHP8-B/VHP840Q.Seq.d/ 1322 0.0
AHL348 (AHL348Q) /CSM/AH/AHL3-B/AHL348Q.Seq.d/ 1322 0.0
AHC445 (AHC445Q) /CSM/AH/AHC4-B/AHC445Q.Seq.d/ 1322 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 141 1e-81 8
X15386|X15386.1 Dictyostelium discoideum H6 gene mRNA. 244 1e-70 3
BI863585|BI863585.1 kx46a06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 4e-18 4
BI863575|BI863575.1 kx45h07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence. 66 9e-15 3
BI451383|BI451383.1 kx23e09.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 9e-15 3
BM056853|BM056853.1 2154-85 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2154-85, mRNA sequence. 92 3e-14 1
DR447725|DR447725.1 AR1047E10 A. gomesiana hemocytes normalized library Acanthoscurria gomesiana cDNA clone AR1047E10 5', mRNA sequence. 88 6e-14 2
DR443579|DR443579.1 AR2018A03 A. gomesiana hemocytes library Acanthoscurria gomesiana cDNA clone AR2018A03 5', mRNA sequence. 88 6e-14 2
BM058578|BM058578.1 2193-94 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-94, mRNA sequence. 90 1e-13 1
BM058379|BM058379.1 2191-29 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2191-29, mRNA sequence. 90 1e-13 1
dna update 2005.12. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 206 4e-66
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 205 3e-65
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran... 205 4e-65
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 204 4e-65
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 204 1e-64
(P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 204 1e-64
AK159514_1(AK159514|pid:none) Mus musculus osteoclast-like cell ... 204 1e-64
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 204 1e-64
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 204 1e-64
AJ278147_1(AJ278147|pid:none) Rattus norvegicus partial Ef-2 gen... 204 1e-64
protein update 2009. 4.14
PSORT

psg: 0.47 gvh: 0.43 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: vacuolar

>> prediction for SHA256 is cyt

5' end seq. ID SHA256F
5' end seq.
>SHA256F.Seq
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTGCATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
ANGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCANA
AATATGTCTGTTATNGCTCATGTNGATCATGGTAAAACTACTCTTACTGATTCATTAATT
CAAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGT
CCANATGAACAATTACGNGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAA
ANGCCAAAAGNNNNNNNNNN
Length of 5' end seq. 440
3' end seq. ID SHA256Z
3' end seq.
>SHA256Z.Seq
NNNNNNNNNNTCTACATGAAATCTGAACCCATTATCGTCAGACCTAACTGATGATATTGA
TAATGGTTTGGTGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCTATGATAA
ACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGG
TCCAAATGTTTTAGTTAACAAAACCAAAGGGTGTTCAATATCTTCATGAAATTAAAGACT
CTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGA
GATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTA
GTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAAC
CAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTG
GTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTG
GTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTG
CTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGA
GTTCAATTGGTATCGTTGGTCAAGANAAAAAAA
Length of 3' end seq. 693
Connected seq. ID SHA256P
Connected seq.
>SHA256P.Seq
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTGCATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
ANGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCANA
AATATGTCTGTTATNGCTCATGTNGATCATGGTAAAACTACTCTTACTGATTCATTAATT
CAAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGT
CCANATGAACAATTACGNGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAA
ANGCCAAAAG----------TCTACATGAAATCTGAACCCATTATCGTCAGACCTAACTG
ATGATATTGATAATGGTTTGGTGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATC
TCTATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAG
AATATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGGTGTTCAATATCTTCATGAA
ATTAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGT
GAGAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATT
CATAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTA
TCAGCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGT
GGTATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAA
CGTCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTT
GGTCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTT
GATCATTGGAGTTCAATTGGTATCGTTGGTCAAGANAAAAAAA
Length of connected seq. 1113
Full length Seq ID -
Full length Seq. -
Length of full length seq. -