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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA252
Library SH
(Link to library)
Clone ID SHA252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15779-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHA252 (SHA252Q) /CSM/SH/SHA2-C/SHA252Q.Seq.d/
XXXXXXXXXXCTCTCTCAAACCATTGGACCATTGATTAAAAAGATTTACTCATCAAAAAA
GTCTTGTGAAATTGATCCAACCAAATTGGAGAAGGGTGAGGATATTAAAAAGAATTGTAA
GAATCTTTTAAGTTGGGTTAAAAAGATGACTACTGCTATCCTCTCTAGTGTAAATAATTG
TCCTGGCCCATTGAGAGAGGTATTCAAATCCATTCAAGATAAAGTGGTTCAACGTTATCC
AAAGGATGAAATCACACGTTATACAGCCGTAAGTGGTTTCATTTTCCTTCGTTTCTTTTG
TCCTGCAATTTTAGCTCCAAAACTTTTCGATCTAATGCCAGATCATCCAGGCATTAAAAC
TACTCGTTCTCTCATTCTTATTGCAAAAACCTTACAAAATTTGGCAAATCAAGTAGAATT
TGGTGAATACAAAGAAGACTTTATGAAAGATATGAATCGTTTCGTAATTGATAATATGGA
AAATATGAAATCATTCATTAATACTCTTTCAACAGTTCCTGCGGATTGTCCACCTGGTGC
TTTACAATCACCAATCATACTGGAAAAAGAATTGGCTTGTCTATATCGTCATTTAATTAA
ACAACGTCAAGATATGGCTGAAGAAATGGAGTCAACTGAATCTGAACCAAAAACTCAACA
AGAAAAAGATTCTTTTGGAAAATTAATTAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---SQTIGPLIKKIYSSKKSCEIDPTKLEKGEDIKKNCKNLLSWVKKMTTAILSSVNNCP
GPLREVFKSIQDKVVQRYPKDEITRYTAVSGFIFLRFFCPAILAPKLFDLMPDHPGIKTT
RSLILIAKTLQNLANQVEFGEYKEDFMKDMNRFVIDNMENMKSFINTLSTVPADCPPGAL
QSPIILEKELACLYRHLIKQRQDMAEEMESTESEPKTQQEKDSFGKLIK
Translated Amino Acid sequence (All Frames) 
Frame A:
---slkpldh*lkrfthqkslvkliqpnwrrvrilkrivrif*vglkr*lllsslv*iiv
lah*erysnpfkikwfnviqrmkshviqp*vvsfsfvsfvlqf*lqnfsi*cqiiqalkl
lvlsfllqkpykiwqik*nlvntkktl*ki*ivs*liiwki*nhslilfqqflrivhlvl
ynhqsywkknwlvyivi*lnnvkiwlkkwsqlnlnqklnkkkillen*l


Frame B:
---lsnhwtid*kdllikkvl*n*snqigeg*gy*kel*esfklg*kddycypl*ck*ls
wpiergiqihsr*sgstlskg*nhtlysrkwfhfpsfllscnfssktfrsnarssrh*ny
sfshsycknltkfgkssriw*iqrrlyeryesfrn**ygkyeiih*ysfnsscglstwcf
titnhtgkriglsissfn*ttsryg*rngvn*i*tknstrkrffwkin*


Frame C:
---SQTIGPLIKKIYSSKKSCEIDPTKLEKGEDIKKNCKNLLSWVKKMTTAILSSVNNCP
GPLREVFKSIQDKVVQRYPKDEITRYTAVSGFIFLRFFCPAILAPKLFDLMPDHPGIKTT
RSLILIAKTLQNLANQVEFGEYKEDFMKDMNRFVIDNMENMKSFINTLSTVPADCPPGAL
QSPIILEKELACLYRHLIKQRQDMAEEMESTESEPKTQQEKDSFGKLIK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA252 (SHA252Q) /CSM/SH/SHA2-C/SHA252Q.Seq.d/                       1350   0.0
SHG618 (SHG618Q) /CSM/SH/SHG6-A/SHG618Q.Seq.d/                       1342   0.0
AHM528 (AHM528Q) /CSM/AH/AHM5-B/AHM528Q.Seq.d/                       1342   0.0
VHK224 (VHK224Q) /CSM/VH/VHK2-A/VHK224Q.Seq.d/                       1336   0.0
AHE512 (AHE512Q) /CSM/AH/AHE5-A/AHE512Q.Seq.d/                       1332   0.0
AHI639 (AHI639Q) /CSM/AH/AHI6-B/AHI639Q.Seq.d/                       1306   0.0
CHI471 (CHI471Q) /CSM/CH/CHI4-C/CHI471Q.Seq.d/                       1235   0.0
CFJ181 (CFJ181Q) /CSM/CF/CFJ1-D/CFJ181Q.Seq.d/                       1221   0.0
CHL838 (CHL838Q) /CSM/CH/CHL8-B/CHL838Q.Seq.d/                       1193   0.0
SHC526 (SHC526Q) /CSM/SH/SHC5-B/SHC526Q.Seq.d/                       1140   0.0
own update 2004. 7.23
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CG389607|CG389607.1 ZMMBBc0573A09r ZMMBBc Zea mays genomic clone ZMMBBc0573A09 3',genomic survey sequence.    50   0.062  1
CR354590|CR354590.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   0.23   4
AL592504|AL592504.6 Human DNA sequence from clone RP11-320J16 on chromosome X. Contains  STSs and GSSs.    40   1.6    4
AL160278|AL160278.24 Human DNA sequence from clone RP11-574G7 on chromosome 9.    38   1.8    3
AC154484|AC154484.2 Mus musculus BAC clone RP24-115C5 from chromosome 14, complete sequence.    38   2.1    4
AC006900|AC006900.1 Caenorhabditis elegans clone Y73F10, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44   3.0    3
CD923430|CD923430.1 G750.108G22F010530 G750 Triticum aestivum cDNA clone G750108G22, mRNA sequence.    44   3.8    1
CD453775|CD453775.1 WHE2108_D02_H04ZT CS wheat salt-stressed crown cDNA library Triticum aestivum cDNA clone WHE2108_D02_H04, mRNA sequence.    44   3.8    1
BQ487459|BQ487459.1 WHE2108_D02_H04ZY Wheat salt-stressed crown cDNA library Triticum aestivum cDNA clone WHE2108_D02_H04, mRNA sequence.    44   3.8    1
CA743719|CA743719.1 wri1s.pk005.b22 wri1s Triticum aestivum cDNA clone wri1s.pk005.b22 5' end, mRNA sequence.    44   3.8    1
dna update 2005.12. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270115_10(AM270115|pid:none) Aspergillus niger contig An06c009...   147   2e-34
AM920437_405(AM920437|pid:none) Penicillium chrysogenum Wisconsi...   141   2e-32
CR858268_1(CR858268|pid:none) Pongo abelii mRNA; cDNA DKFZp469B2...   139   8e-32
BX470189_3(BX470189|pid:none) Zebrafish DNA sequence from clone ...   139   1e-31
AK300269_1(AK300269|pid:none) Homo sapiens cDNA FLJ61389 complet...   138   1e-31
(P20936) RecName: Full=Ras GTPase-activating protein 1;         ...   138   1e-31
AK312739_1(AK312739|pid:none) Homo sapiens cDNA, FLJ93145, Homo ...   138   1e-31
AK161497_1(AK161497|pid:none) Mus musculus adult male testis cDN...   138   2e-31
AK133354_1(AK133354|pid:none) Mus musculus adult male testis cDN...   138   2e-31
(P09851) RecName: Full=Ras GTPase-activating protein 1;         ...   134   3e-30
protein update 2009. 5.28
PSORT 

 psg: 0.64  gvh: 0.38  alm: 0.30  top: 0.53  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SHA252 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHA252Z
3' end seq. 
>SHA252Z.Seq
NNNNNNNNNNCTCTCTCAAACCATTGGACCATTGATTAAAAAGATTTACTCATCAAAAAA
GTCTTGTGAAATTGATCCAACCAAATTGGAGAAGGGTGAGGATATTAAAAAGAATTGTAA
GAATCTTTTAAGTTGGGTTAAAAAGATGACTACTGCTATCCTCTCTAGTGTAAATAATTG
TCCTGGCCCATTGAGAGAGGTATTCAAATCCATTCAAGATAAAGTGGTTCAACGTTATCC
AAAGGATGAAATCACACGTTATACAGCCGTAAGTGGTTTCATTTTCCTTCGTTTCTTTTG
TCCTGCAATTTTAGCTCCAAAACTTTTCGATCTAATGCCAGATCATCCAGGCATTAAAAC
TACTCGTTCTCTCATTCTTATTGCAAAAACCTTACAAAATTTGGCAAATCAAGTAGAATT
TGGTGAATACAAAGAAGACTTTATGAAAGATATGAATCGTTTCGTAATTGATAATATGGA
AAATATGAAATCATTCATTAATACTCTTTCAACAGTTCCTGCGGATTGTCCACCTGGTGC
TTTACAATCACCAATCATACTGGAAAAAGAATTGGCTTGTCTATATCGTCATTTAATTAA
ACAACGTCAAGATATGGCTGAAGAAATGGAGTCAACTGAATCTGAACCAAAAACTCAACA
AGAAAAAGATTCTTTTGGAAAATTAATTAAA
Length of 3' end seq. 691
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -