SHA223
Library SH
(Link to library)
Clone ID SHA223
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHA223P
(Link to Original site)
Representative DNA sequence
>SHA223 (SHA223Q) /CSM/SH/SHA2-A/SHA223Q.Seq.d/
AAAAACAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAA
CAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTT
TTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTA
CTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATT
TTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXXXX
XXXXXCTCACTCAACCAATGGTCATTGCAGGTAATGCCTTCACTCAAACAAGTGCTACTG
CCGTCTTAAATATGGTCGCTGGTGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATG
GTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCG
CTGCTAACCTCAACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAA
ACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAA
CCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCT
CTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCA
ATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCA
TCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTG
CTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGG
CTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGA
AGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAAC
TCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTA
AACACACCCTTTTCAATTTTAAAACAATAAAAATTTACATATTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
kqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyiit
tnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---LTQPMVIAGNAFTQTSATAVLNMVAGGSIESKVIDFTHGTIQGVGALKCGTCNFANK
IAANLNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSS
ISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVKGNVSSVSCLTSS
TAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGLKRL*idstpplq*q*ikii
qliliflysnqcicqlty*lfkhtlfnfktikiyilk


Translated Amino Acid sequence (All Frames)
Frame A:
knkqtknnnlkkq*fivk*kqlknh*lffspphykfqyffln*fpaflffytittnpisl
lptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---LTQPMVIAGNAFTQTSATAVLNMVAGGSIESKVIDFTHGTIQGVGALKCGTCNFANK
IAANLNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSS
ISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVKGNVSSVSCLTSS
TAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGLKRL*idstpplq*q*ikii
qliliflysnqcicqlty*lfkhtlfnfktikiyilk

Frame B:
ktnkqktti*knnnl**sknn*ritncffllltinsniff*infqlfcfftqsqptlyhy
yqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---slnqwslqvmpslkqvllps*iwslvvqlnqkllislmvpfkvlvllnvvlvtlpir
slltstllvtlkwpqlqlsmqtlml*cqsppqpkpqslnhqprlstvrpplnhhqahhhp
slnnsfq*sfvqvllmllvtsmslpqkpiklklplvlysnssqpqllkvmspqlavspqa
lllllnklpvlllllpkkllwllplkfgql*ihhvtvnvd*rdykliqlllsndnklk*y
nsflfffiltnvfvn*linflntpfsilkq*kfty*

Frame C:
kqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyiit
tnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---hstnghcr*clhsnkcycrlkygrwwfn*iksy*fhswyhsrcwcs*mwyl*lcq*d
rc*pqhcw*r*ngrncnclckh*cfnvnhhlnpnlnlsiinqdcqr*dhhsiiikliiih
l*tirsndrlfryc*ccw*pqcrclrsqss*nclwyciqihlspsc*r*clls*lshlkh
ccccstscrccccccpkscygccl*slvnckftm*l*mwieeiin*fnssspmtin*nnt
thsyfslf*pmylsinlltf*thpfqf*nnknlhik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 1057 0.0
SHG514 (SHG514Q) /CSM/SH/SHG5-A/SHG514Q.Seq.d/ 1057 0.0
SHG152 (SHG152Q) /CSM/SH/SHG1-C/SHG152Q.Seq.d/ 1057 0.0
SHD645 (SHD645Q) /CSM/SH/SHD6-B/SHD645Q.Seq.d/ 1057 0.0
SHB618 (SHB618Q) /CSM/SH/SHB6-A/SHB618Q.Seq.d/ 1057 0.0
SHB237 (SHB237Q) /CSM/SH/SHB2-B/SHB237Q.Seq.d/ 1057 0.0
SHA633 (SHA633Q) /CSM/SH/SHA6-B/SHA633Q.Seq.d/ 1057 0.0
SHA223 (SHA223Q) /CSM/SH/SHA2-A/SHA223Q.Seq.d/ 1057 0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/ 1051 0.0
SHC723 (SHC723Q) /CSM/SH/SHC7-A/SHC723Q.Seq.d/ 1049 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 1057 0.0 2
AC022143|AC022143.7 Homo sapiens chromosome 19 clone CTD-2378H7, complete sequence. 48 0.051 2
AX344185|AX344185.1 Sequence 32 from Patent WO0200926. 40 0.098 4
AX251781|AX251781.1 Sequence 42 from Patent WO0168911. 40 0.098 4
BD460245|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.098 4
BD452167|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.098 4
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein. 50 0.10 1
AC008747|AC008747.5 Homo sapiens chromosome 19 clone CTD-2588C8, complete sequence. 48 0.35 3
AL845362|AL845362.4 Zebrafish DNA sequence from clone CH211-142H2 in linkage group 20. 38 0.36 3
AC170957|AC170957.1 Bos taurus clone CH240-254I20, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces. 48 0.40 1
dna update 2005.12. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 318 3e-85

protein update 2008.11.11
PSORT

psg: 0.88 gvh: 0.45 alm: 0.41 top: 0.60 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: cytoskeletal
16.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SHA223 is cyt

5' end seq. ID SHA223F
5' end seq.
>SHA223F.Seq
AAAAACAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAA
CAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTT
TTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTA
CTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATT
TTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 305
3' end seq. ID SHA223Z
3' end seq.
>SHA223Z.Seq
NNNNNNNNNNCTCACTCAACCAATGGTCATTGCAGGTAATGCCTTCACTCAAACAAGTGC
TACTGCCGTCTTAAATATGGTCGCTGGTGGTTCAATTGAATCAAAAGTTATTGATTTCAC
TCATGGTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAA
GATCGCTGCTAACCTCAACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTA
TGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATC
ATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATC
CATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAA
CCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAA
ATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAG
CACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGC
TATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGG
ATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAAT
ACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACT
TTTTAAACACACCCTTTTCAATTTTAAAACAATAAAAATTTACATATTAAAA
Length of 3' end seq. 832
Connected seq. ID SHA223P
Connected seq.
>SHA223P.Seq
AAAAACAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAA
CAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTT
TTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTA
CTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATT
TTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA-----
-----CTCACTCAACCAATGGTCATTGCAGGTAATGCCTTCACTCAAACAAGTGCTACTG
CCGTCTTAAATATGGTCGCTGGTGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATG
GTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCG
CTGCTAACCTCAACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAA
ACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAA
CCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCT
CTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCA
ATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCA
TCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTG
CTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGG
CTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGA
AGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAAC
TCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTA
AACACACCCTTTTCAATTTTAAAACAATAAAAATTTACATATTAAAA
Length of connected seq. 1117
Full length Seq ID -
Full length Seq. -
Length of full length seq. -