NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA213
Library SH
(Link to library)
Clone ID SHA213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11277-1
Original site URL
Representative seq. ID SHA213P
(Link to Original site)
Representative DNA sequence 
>SHA213 (SHA213Q) /CSM/SH/SHA2-A/SHA213Q.Seq.d/
TTAATCCCCAATTATTACATTGTTGTAATATTTGCATTTCAAAATTTTAATTTTTTTTAA
CCAAATAAAAAAAATAAAAAAAAAAAAAAAAAANTCNGTTTTTAAAAAAAAAAXXXXXXX
XXXCAAGTCAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAAGTAAACTAACAGAAG
ATAGAAGAAATGAAGTTTACGTAATCAGTGGAAGAGATCGTTCGTCATTGGAGAAGTGGT
TAGGTCATTTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCACAAGACAACCTGGTG
AAAATCAACCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGAAAGACACAGTTTTAT
CAATAATGCAAGATTTTGAAGATAGAACACCAGGTTCAATGACAGAAACTAAACAAGTCA
ATATCACATGGCATTATAGAAATGCTGATCCAGACTTTGGTCAATTCCAAGCTAAAGAAT
TGATTGCACAACTTCGTTCAGTCGCAAATAAATACCCATTGGATATTTTATCAGGAAAGA
AAGCAATTGAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAGTAAAAATGATCCTTC
AAAAGATTGATGCAGATTTCATACTTTGTATTGGTGATGATAAAACTGATGAAGATATGT
TTAAAGCACTTTATAATGTACCATCATG
sequence update 2002.10.25
Translated Amino Acid sequence 
*spiitll*YLHFKILIFFNQIKKIKKKKKXSVFKKK---

---SQAMPSKQLIDVLSKLTEDRRNEVYVISGRDRSSLEKWLGHLPIGMSCEHGVFTRQP
GENQPWTESPNAEVQWKDTVLSIMQDFEDRTPGSMTETKQVNITWHYRNADPDFGQFQAK
ELIAQLRSVANKYPLDILSGKKAIEVKPIGINKGEIVKMILQKIDADFILCIGDDKTDED
MFKALYNVPS
Translated Amino Acid sequence (All Frames) 
Frame A:
lipnyyivvifafqnfnff*pnkknkkkkkkxxf*kk---

---qvkqchqsn*lmf*vn*qkieemkft*sveeivrhwrsg*viyqlvclvnmafsqdn
lvkinhglkvqmqkfngktqfyq*ckilkiehqvq*qklnksishgiiemliqtlvnskl
kn*lhnfvqsqinthwifyqerkqlklnq*vsikvk**k*sfkrlmqisyfvlvmiklmk
iclkhfimyhh

Frame B:
*spiitll*YLHFKILIFFNQIKKIKKKKKXSVFKKK---

---kssnaikain*cfk*tnrr*kk*slrnqwkrsfvigevvrsftnwyvl*twrfhktt
w*kstmd*kskcrssmerhsfinnarf*r*ntrfndrn*tsqyhmal*kc*srlwsips*
ridcttsfsrk*ipigyfirkesn*s*tnryq*r*nskndpskd*crfhtlyw***n**r
yv*stl*ctim

Frame C:
npqllhccniciskf*ffltk*kk*kkkkkxxflkkk---

---SQAMPSKQLIDVLSKLTEDRRNEVYVISGRDRSSLEKWLGHLPIGMSCEHGVFTRQP
GENQPWTESPNAEVQWKDTVLSIMQDFEDRTPGSMTETKQVNITWHYRNADPDFGQFQAK
ELIAQLRSVANKYPLDILSGKKAIEVKPIGINKGEIVKMILQKIDADFILCIGDDKTDED
MFKALYNVPS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA213 (SHA213Q) /CSM/SH/SHA2-A/SHA213Q.Seq.d/                       1120   0.0
CHP648 (CHP648Q) /CSM/CH/CHP6-B/CHP648Q.Seq.d/                       1118   0.0
CHG829 (CHG829Q) /CSM/CH/CHG8-B/CHG829Q.Seq.d/                       1118   0.0
CHG693 (CHG693Q) /CSM/CH/CHG6-D/CHG693Q.Seq.d/                       1118   0.0
AHN784 (AHN784Q) /CSM/AH/AHN7-D/AHN784Q.Seq.d/                       1118   0.0
AHI533 (AHI533Q) /CSM/AH/AHI5-B/AHI533Q.Seq.d/                       1118   0.0
AHE394 (AHE394Q) /CSM/AH/AHE3-D/AHE394Q.Seq.d/                       1118   0.0
AHC884 (AHC884Q) /CSM/AH/AHC8-D/AHC884Q.Seq.d/                       1118   0.0
AHB860 (AHB860Q) /CSM/AH/AHB8-C/AHB860Q.Seq.d/                       1118   0.0
CHI663 (CHI663Q) /CSM/CH/CHI6-C/CHI663Q.Seq.d/                       1116   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF609616|CF609616.1 INFIO01_000425 Grape Inflorescence pSPORT1 Library Vitis viniferacDNA 5', mRNA sequence.    42   0.002  3
CO364472|CO364472.1 RTK1_15_H07.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_15_H07_A029 5', mRNA sequence.    38   0.004  3
AF208030|AF208030.1 Zygosaccharomyces rouxii trehalose-6-phosphate phosphatase (TPS2) mRNA, complete cds.    36   0.042  3
AJ242743|AJ242743.1 Schizosaccharomyces pombe tpp1+ gene for trehalose-6P phosphatase,  exon 1.    50   0.062  1
Z97209|Z97209.1 S.pombe chromosome I cosmid c19G12.                50   0.062  1
L40359|L40359.1 Schizosaccharomyces pombe phosphatidate phosphatase (TPP) mRNA, partial cds.    50   0.062  1
D89225|D89225.1 Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1342.    50   0.062  1
DT462516|DT462516.1 GH_CHX12D08.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX12D08 3', mRNA sequence.    48   0.24   1
DT462427|DT462427.1 GH_CHX12B06.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX12B06 5', mRNA sequence.    48   0.24   1
CO995468|CO995468.1 nad03-1cs2-f02 Nad03 Nuphar advena cDNA clone nad03-1cs2-f02 5', mRNA sequence.    48   0.24   1
dna update 2005.12. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NU9) RecName: Full=Alpha,alpha-trehalose-phosphate synthase ...   382   e-105
EU399552_1(EU399552|pid:none) Cryptococcus gattii isolate R265TP...   172   6e-42
AE017342_262(AE017342|pid:none) Cryptococcus neoformans var. neo...   171   2e-41
CR382130_585(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   171   2e-41
DQ407640_1(DQ407640|pid:none) Acanthamoeba castellanii trehalose...   164   3e-39
CP000592_242(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   163   4e-39
CR382139_531(CR382139|pid:none) Debaryomyces hansenii strain CBS...   162   6e-39
CP000504_1318(CP000504|pid:none) Pyrobaculum islandicum DSM 4184...   162   8e-39
CP000500_340(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...   161   1e-38
D89225_1(D89225|pid:none) Schizosaccharomyces pombe mRNA, partia...   159   7e-38
protein update 2009. 4.14
PSORT 

 psg: 0.86  gvh: 0.22  alm: 0.37  top: 1.03  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.14  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: plasma membrane

>> prediction for SHA213 is nuc
5' end seq. ID SHA213F
5' end seq. 
>SHA213F.Seq
TTAATCCCCAATTATTACATTGTTGTAATATTTGCATTTCAAAATTTTAATTTTTTTTAA
CCAAATAAAAAAAATAAAAAAAAAAAAAAAAAANTCNGTTTTTAAAAAAAAAANNNNNNN
NNN
Length of 5' end seq. 123
3' end seq. ID SHA213Z
3' end seq. 
>SHA213Z.Seq
NNNNNNNNNNCAAGTCAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAAGTAAACTA
ACAGAAGATAGAAGAAATGAAGTTTACGTAATCAGTGGAAGAGATCGTTCGTCATTGGAG
AAGTGGTTAGGTCATTTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCACAAGACAA
CCTGGTGAAAATCAACCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGAAAGACACA
GTTTTATCAATAATGCAAGATTTTGAAGATAGAACACCAGGTTCAATGACAGAAACTAAA
CAAGTCAATATCACATGGCATTATAGAAATGCTGATCCAGACTTTGGTCAATTCCAAGCT
AAAGAATTGATTGCACAACTTCGTTCAGTCGCAAATAAATACCCATTGGATATTTTATCA
GGAAAGAAAGCAATTGAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAGTAAAAATG
ATCCTTCAAAAGATTGATGCAGATTTCATACTTTGTATTGGTGATGATAAAACTGATGAA
GATATGTTTAAAGCACTTTATAATGTACCATCATG
Length of 3' end seq. 575
Connected seq. ID SHA213P
Connected seq. 
>SHA213P.Seq
TTAATCCCCAATTATTACATTGTTGTAATATTTGCATTTCAAAATTTTAATTTTTTTTAA
CCAAATAAAAAAAATAAAAAAAAAAAAAAAAAANTCNGTTTTTAAAAAAAAAA-------
---CAAGTCAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAAGTAAACTAACAGAAG
ATAGAAGAAATGAAGTTTACGTAATCAGTGGAAGAGATCGTTCGTCATTGGAGAAGTGGT
TAGGTCATTTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCACAAGACAACCTGGTG
AAAATCAACCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGAAAGACACAGTTTTAT
CAATAATGCAAGATTTTGAAGATAGAACACCAGGTTCAATGACAGAAACTAAACAAGTCA
ATATCACATGGCATTATAGAAATGCTGATCCAGACTTTGGTCAATTCCAAGCTAAAGAAT
TGATTGCACAACTTCGTTCAGTCGCAAATAAATACCCATTGGATATTTTATCAGGAAAGA
AAGCAATTGAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAGTAAAAATGATCCTTC
AAAAGATTGATGCAGATTTCATACTTTGTATTGGTGATGATAAAACTGATGAAGATATGT
TTAAAGCACTTTATAATGTACCATCATG
Length of connected seq. 678
Full length Seq ID -
Full length Seq. -
Length of full length seq. -