SHA183
Library SH
(Link to library)
Clone ID SHA183
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11096-1|Contig-U12663-1
Original site URL
Representative seq. ID SHA183P
(Link to Original site)
Representative DNA sequence
>SHA183 (SHA183Q) /CSM/SH/SHA1-D/SHA183Q.Seq.d/
ATCATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTC
CGCAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAA
AAAAAAAXXXXXXXXXXTTAGATATGTTGAAAGCTCATAAAAAAGGTATTCGTCGTGCCG
CTGTAAATACATTTGGTTACATTGCAAAAGCTATTGGTCCTCAAGAGGTATTGGCAACCC
TATTAAACAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTG
CCATTGTTGCGGAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAATATC
GTATTCCAGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAAT
ATATTGGCGAAATGGGTAAAGACTATATTTACGCCGTAACTACCCTACTCGAAGATGCAC
TCATGGATAGAGATGCTGTACATCGTCAAACCGCTTGCTCTGCAATTAAACATATTTCAT
TGGGTGTAATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGC
CAAATGTTTTCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTGAAGGTT
CACGNTTNGNTNTAGNTCCAAATACTANTCTTCAATATACCCNTCAAGGTTGTATTCCAT
CCATCTC
sequence update 2002.10.25
Translated Amino Acid sequence
slhvrl*nisqiffilk*isaiptnkkkl*r*nli*YNIKKK---

---LDMLKAHKKGIRRAAVNTFGYIAKAIGPQEVLATLLNNLKVQDRQNRVCTTVAIAIV
AETCAPYTVLPGLINEYRIPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTTLLEDALMD
RDAVHRQTACSAIKHISLGVMGLGCEDSLTHLLNYVWPNVFETSPHVINAFLEAVEGSRX
XXXPNTXLQYTXQGCIPSI


Translated Amino Acid sequence (All Frames)
Frame A:
iitcsiveyftdffyfkinfrnsnk*keiieikfnii*ykkk---

---LDMLKAHKKGIRRAAVNTFGYIAKAIGPQEVLATLLNNLKVQDRQNRVCTTVAIAIV
AETCAPYTVLPGLINEYRIPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTTLLEDALMD
RDAVHRQTACSAIKHISLGVMGLGCEDSLTHLLNYVWPNVFETSPHVINAFLEAVEGSRX
XXXPNTXLQYTXQGCIPSI

Frame B:
slhvrl*nisqiffilk*isaiptnkkkl*r*nli*YNIKKK---

---*ic*klikkvfvvpl*ihlvtlqkllvlkrywqpy*ti*kfkivktefvqplplpll
rklvhlipfyqv*smnivfqs*mfkmvf*nlylsslnilakwvktiftp*lpyskmhswi
emlyivkplalqlnifhwv*wv*vvkihsliysitfgqmfskllhmlstls*rplkvhxx
x*xqilxfnipxkvvfhps

Frame C:
hymfdcrifhrfflf*nkfpqfqqikrnyrdki*ynii*kk---

---ryvess*krysscrckyiwlhcksywssrgignpikqfessrsskqslynrchchcc
gnlctlyrftrsnq*isysrvecskwcfeififpl*iywrng*rlylrrnyptrrcthg*
rcctssnrllcn*tyfigcngfrl*rfthsftqlrlakcfrnfstcyqrflrgr*rftxx
xxskyxssiypsrlysihl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHA183 (SHA183Q) /CSM/SH/SHA1-D/SHA183Q.Seq.d/ 1128 0.0
AHA193 (AHA193Q) /CSM/AH/AHA1-D/AHA193Q.Seq.d/ 1104 0.0
VHA852 (VHA852Q) /CSM/VH/VHA8-C/VHA852Q.Seq.d/ 1100 0.0
AHD177 (AHD177Q) /CSM/AH/AHD1-D/AHD177Q.Seq.d/ 1037 0.0
AHD733 (AHD733Q) /CSM/AH/AHD7-B/AHD733Q.Seq.d/ 1031 0.0
AHM560 (AHM560Q) /CSM/AH/AHM5-C/AHM560Q.Seq.d/ 1029 0.0
SHL853 (SHL853Q) /CSM/SH/SHL8-C/SHL853Q.Seq.d/ 1027 0.0
CHM817 (CHM817Q) /CSM/CH/CHM8-A/CHM817Q.Seq.d/ 1027 0.0
CHM843 (CHM843Q) /CSM/CH/CHM8-B/CHM843Q.Seq.d/ 1021 0.0
VHB738 (VHB738Q) /CSM/VH/VHB7-B/VHB738Q.Seq.d/ 1015 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 map complement(6807709-6776860) strain AX4, complete sequence. 1088 0.0 4
AU312337|AU312337.1 Elaphe quadrivirgata cDNA, clone:Eq_aB_021_F03. 109 9e-44 3
CX303109|CX303109.1 C08027F07SK PhyRootSw1 Citrus sinensis cDNA clone C08027F07, mRNA sequence. 78 4e-33 3
DV664609|DV664609.1 CGN-1811 Pericarp Coffea canephora cDNA clone cccp22c1 5', mRNA sequence. 100 2e-32 5
BJ615493|BJ615493.1 Xenopus laevis cDNA clone:XL172e10, 5' end. 68 4e-26 4
BJ617934|BJ617934.1 Xenopus laevis cDNA clone:XL182p08, 5' end. 68 6e-26 4
CK804232|CK804232.1 AGENCOURT_19145222 NICHD_XGC_Te2 Xenopus laevis cDNA clone IMAGE:7207503 5', mRNA sequence. 68 5e-24 4
CJ466124|CJ466124.1 Macaca fascicularis mRNA, clone: QnpA-15448, 5' end, expressed in brain parietal lobe. 74 2e-23 4
DV769286|DV769286.1 ILLUMIGEN_MCQ_68109 Katze_MMTE Macaca mulatta cDNA clone IBIUW:38456 5' similar to Bases 1 to 841 highly similar to human SF3B1 (Hs.471011), mRNA sequence. 74 2e-23 4
BI505248|BI505248.1 BB170019A10C07.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019A10C07 5', mRNA sequence. 88 4e-23 2
dna update 2005.12. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP008208_305(AP008208|pid:none) Oryza sativa (japonica cultivar-... 325 6e-88
AK221391_1(AK221391|pid:none) Arabidopsis thaliana mRNA for nucl... 320 3e-86
AE014134_132(AE014134|pid:none) Drosophila melanogaster chromoso... 320 3e-86
(O75533) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu... 311 9e-84
(O57683) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu... 310 2e-83
CP000583_21(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ... 306 5e-82
CU633899_368(CU633899|pid:none) Podospora anserina genomic DNA c... 293 3e-78
AM270010_46(AM270010|pid:none) Aspergillus niger contig An02c015... 293 5e-78
AP007159_186(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 293 5e-78
(Q10178) RecName: Full=U2 snRNP component prp10; &CU329670_1789... 284 2e-75
protein update 2009. 4.14
PSORT

psg: 0.35 gvh: 0.36 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SHA183 is nuc

5' end seq. ID SHA183F
5' end seq.
>SHA183F.Seq
ATCATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTC
CGCAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAA
AAAAAAANNNNNNNNNN
Length of 5' end seq. 137
3' end seq. ID SHA183Z
3' end seq.
>SHA183Z.Seq
NNNNNNNNNNTTAGATATGTTGAAAGCTCATAAAAAAGGTATTCGTCGTGCCGCTGTAAA
TACATTTGGTTACATTGCAAAAGCTATTGGTCCTCAAGAGGTATTGGCAACCCTATTAAA
CAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTGCCATTGT
TGCGGAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAATATCGTATTCC
AGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAATATATTGG
CGAAATGGGTAAAGACTATATTTACGCCGTAACTACCCTACTCGAAGATGCACTCATGGA
TAGAGATGCTGTACATCGTCAAACCGCTTGCTCTGCAATTAAACATATTTCATTGGGTGT
AATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGCCAAATGT
TTTCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTGAAGGTTCACGNTT
NGNTNTAGNTCCAAATACTANTCTTCAATATACCCNTCAAGGTTGTATTCCATCCATCTC
Length of 3' end seq. 600
Connected seq. ID SHA183P
Connected seq.
>SHA183P.Seq
ATCATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTC
CGCAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAA
AAAAAAA----------TTAGATATGTTGAAAGCTCATAAAAAAGGTATTCGTCGTGCCG
CTGTAAATACATTTGGTTACATTGCAAAAGCTATTGGTCCTCAAGAGGTATTGGCAACCC
TATTAAACAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTG
CCATTGTTGCGGAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAATATC
GTATTCCAGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAAT
ATATTGGCGAAATGGGTAAAGACTATATTTACGCCGTAACTACCCTACTCGAAGATGCAC
TCATGGATAGAGATGCTGTACATCGTCAAACCGCTTGCTCTGCAATTAAACATATTTCAT
TGGGTGTAATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGC
CAAATGTTTTCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTGAAGGTT
CACGNTTNGNTNTAGNTCCAAATACTANTCTTCAATATACCCNTCAAGGTTGTATTCCAT
CCATCTC
Length of connected seq. 717
Full length Seq ID -
Full length Seq. -
Length of full length seq. -