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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA176
Library SH
(Link to library)
Clone ID SHA176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHA176P
(Link to Original site)
Representative DNA sequence 
>SHA176 (SHA176Q) /CSM/SH/SHA1-D/SHA176Q.Seq.d/
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTTCCTCCTCACTATAAATTCCAATATTTTTTT
TTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTA
CTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATT
TTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXXXX
XXXXXGGTGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTG
TTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACA
TTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAA
TGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACG
GTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTC
CAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAG
AAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTG
TTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAAC
AAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAG
TTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTG
ATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTC
TTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCA
ATTTTAAAACAATAAAAATTTACATATTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
sinkqktti*knnnl**sknn*ritncffsssl*ipifffklissfsvflhnhnqpyiit
tnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---GGSIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDA
LMSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVA
SEANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAAS
KVWSIVNSPCNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtl
fnfktikiyilk
Translated Amino Acid sequence (All Frames) 
Frame A:
iqstnkkqqfkktiiyskvktikeslivffpphykfqyffln*fpaflffytittnpisl
lptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---GGSIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDA
LMSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVA
SEANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAAS
KVWSIVNSPCNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtl
fnfktikiyilk

Frame B:
fnqqtknnnlkkq*fivk*kqlknh*lffflltinsniff*infqlfcfftqsqptlyhy
yqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---vvqlnqkllislmvpfkvlvllnvvlvtlpirslltstllvtlkwpqlqlsmqtlml
*cqsppqpkpqslnhqprlstvrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslp
qkpiklklplvlysnssqpqllkvmspqlavspqalllllnklpvlllllpkkllwllpl
kfgql*ihhvtvnvd*rdykliqlllsndnklk*ynsflfffiltnvfvn*linflntpf
silkq*kfty*

Frame C:
sinkqktti*knnnl**sknn*ritncffsssl*ipifffklissfsvflhnhnqpyiit
tnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---wfn*iksy*fhswyhsrcwcs*mwyl*lcq*drc*pqhcw*r*ngrncnclckh*cf
nvnhhlnpnlnlsiinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrcl
rsqss*nclwyciqihlspsc*r*clls*lshlkhccccstscrccccccpkscygccl*
slvnckftm*l*mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thpf
qf*nnknlhik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        904   0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/                        904   0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/                        904   0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/                        904   0.0
SHG713 (SHG713Q) /CSM/SH/SHG7-A/SHG713Q.Seq.d/                        904   0.0
SHG514 (SHG514Q) /CSM/SH/SHG5-A/SHG514Q.Seq.d/                        904   0.0
SHG338 (SHG338Q) /CSM/SH/SHG3-B/SHG338Q.Seq.d/                        904   0.0
SHG152 (SHG152Q) /CSM/SH/SHG1-C/SHG152Q.Seq.d/                        904   0.0
SHE430 (SHE430Q) /CSM/SH/SHE4-B/SHE430Q.Seq.d/                        904   0.0
SHD645 (SHD645Q) /CSM/SH/SHD6-B/SHD645Q.Seq.d/                        904   0.0
own update 2002.10.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds.   904   0.0    2
AC022143|AC022143.7 Homo sapiens chromosome 19 clone CTD-2378H7, complete sequence.    48   0.045  2
AX344185|AX344185.1 Sequence 32 from Patent WO0200926.             40   0.076  4
AX251781|AX251781.1 Sequence 42 from Patent WO0168911.             40   0.076  4
BD460245|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle.    40   0.076  4
BD452167|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle.    40   0.076  4
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein.    50   0.096  1
AC008747|AC008747.5 Homo sapiens chromosome 19 clone CTD-2588C8, complete sequence.    48   0.29   3
AL845362|AL845362.4 Zebrafish DNA sequence from clone CH211-142H2 in linkage group 20.    38   0.30   3
AC170957|AC170957.1 Bos taurus clone CH240-254I20, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    48   0.38   1
dna update 2005.12. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   271   2e-71
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR...    34   9.2
protein update 2008.11.11
PSORT 

 psg: 0.67  gvh: 0.45  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHA176 is cyt
5' end seq. ID SHA176F
5' end seq. 
>SHA176F.Seq
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTTCCTCCTCACTATAAATTCCAATATTTTTTT
TTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTA
CTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATT
TTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 305
3' end seq. ID SHA176Z
3' end seq. 
>SHA176Z.Seq
NNNNNNNNNNGGTGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCA
AGGTGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCT
CAACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGC
TTTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGT
CAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATT
CGTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGC
CTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCC
AGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGC
TCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTC
TAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATA
AATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTAT
TTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCT
TTTCAATTTTAAAACAATAAAAATTTACATATTAAAA
Length of 3' end seq. 757
Connected seq. ID SHA176P
Connected seq. 
>SHA176P.Seq
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTTCCTCCTCACTATAAATTCCAATATTTTTTT
TTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTA
CTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATT
TTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA-----
-----GGTGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTG
TTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACA
TTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAA
TGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACG
GTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTC
CAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAG
AAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTG
TTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAAC
AAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAG
TTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTG
ATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTC
TTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCA
ATTTTAAAACAATAAAAATTTACATATTAAAA
Length of connected seq. 1042
Full length Seq ID -
Full length Seq. -
Length of full length seq. -