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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA162
Library SH
(Link to library)
Clone ID SHA162
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15762-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHA162 (SHA162Q) /CSM/SH/SHA1-C/SHA162Q.Seq.d/
ATTTTTAGTCAGGATACCACTGCATTTAAAAAATAATATTGAAATAAAAATAAAAATAAA
AATAAAAAAAATAAAAGATCTATCCATGTTTGGCTATAATTATATATTTATATAATATAA
AAATAAATAAAAAATAAAAATAAATAAATAATAATAATAACTATAATAACAGTAATAATA
AAATGTATAATTTTTTTGATAGAATCAAAGCGCCTCTATCGGAATATAAAAGGTATGCAG
CGAATCATAAGAAAGATGATGATTTTACAGATATTGAGGATAAAATAAATTGTGGACAAT
TTCCGAATGAATATGGTAGTAATGCAATCGAGTTACCAAATTCACCTACATATAATAATA
ATAATAATAATAATAATGGTTCACCAAACGTTTTAAAACAATCTCAATATATAAGTTTTA
TAAATCCATTATCATTACCATCATCATTGATACCACCACCACCAAATTATACATCACAAC
AAAATCTAAGTGATGTAATGAGTAATAATGGTGGTGGTAGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
f*sgyhci*kiilk*k*k*k*kk*kiypclaiiiylynikinkk*k*INNNNNYNNSNNK
MYNFFDRIKAPLSEYKRYAANHKKDDDFTDIEDKINCGQFPNEYGSNAIELPNSPTYNNN
NNNNNGSPNVLKQSQYISFINPLSLPSSLIPPPPNYTSQQNLSDVMSNNGGG---
Translated Amino Acid sequence (All Frames) 
Frame A:
ifsqdttafkk*y*nknknknkknkrsihvwl*lyiyii*k*iknknk*iiiitiitvii
kciiflieskrlyrnikgmqriirkmmilqilrik*ivdnfrmnmvvmqssyqihlhiii
iiiiimvhqtf*nnlni*vl*ihyhyhhh*yhhhqiihhnki*vm**vimvvv---


Frame B:
flvriplhlknnieikikikikkikdlsmfgynyifi*yknk*kikink****l**q***
nv*ff**nqsasigi*kvcses*er**fyry*g*nklwtise*iw**cnrvtkftyi***
*****wftkrfktisiykfyksiiitiiidttttklyittksk*cne**www---


Frame C:
f*sgyhci*kiilk*k*k*k*kk*kiypclaiiiylynikinkk*k*INNNNNYNNSNNK
MYNFFDRIKAPLSEYKRYAANHKKDDDFTDIEDKINCGQFPNEYGSNAIELPNSPTYNNN
NNNNNGSPNVLKQSQYISFINPLSLPSSLIPPPPNYTSQQNLSDVMSNNGGG---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN679 (VHN679Q) /CSM/VH/VHN6-D/VHN679Q.Seq.d/                        301   6e-81
VHK516 (VHK516Q) /CSM/VH/VHK5-A/VHK516Q.Seq.d/                        301   6e-81
VHB701 (VHB701Q) /CSM/VH/VHB7-A/VHB701Q.Seq.d/                        301   6e-81
SHL662 (SHL662Q) /CSM/SH/SHL6-C/SHL662Q.Seq.d/                        301   6e-81
SHL196 (SHL196Q) /CSM/SH/SHL1-D/SHL196Q.Seq.d/                        301   6e-81
SHJ621 (SHJ621Q) /CSM/SH/SHJ6-A/SHJ621Q.Seq.d/                        301   6e-81
SHH206 (SHH206Q) /CSM/SH/SHH2-A/SHH206Q.Seq.d/                        301   6e-81
SHA162 (SHA162Q) /CSM/SH/SHA1-C/SHA162Q.Seq.d/                        301   6e-81
CHH435 (CHH435Q) /CSM/CH/CHH4-B/CHH435Q.Seq.d/                        301   6e-81
AHR483 (AHR483Q) /CSM/AH/AHR4-D/AHR483Q.Seq.d/                        301   6e-81
own update 2002.10.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC147224|AC147224.5 Mus musculus BAC clone RP23-101E7 from 15, complete sequence.    36   0.029  2
AC121898|AC121898.3 Mus musculus BAC clone RP24-161A24 from chromosome 15, complete sequence.    36   0.029  2
DU473463|DU473463.1 1098415701627 CHORI-243 Ovis aries genomic clone CH243-317B11, genomic survey sequence.    50   0.047  1
DU271802|DU271802.1 1098415990056 CHORI-243 Ovis aries genomic clone CH243-186O15, genomic survey sequence.    50   0.047  1
AC109772|AC109772.9 Rattus norvegicus clone CH230-77L19, WORKING DRAFT SEQUENCE, 4 unordered pieces.    34   0.39   2
AC134205|AC134205.1 Rattus norvegicus clone CH230-110I22, *** SEQUENCING IN PROGRESS ***, 61 unordered pieces.    34   0.41   2
AC090349|AC090349.7 Homo sapiens chromosome 18, clone RP11-844N22, complete sequence.    46   0.69   2
DT045332| MGC86306 protein - Xenopus laevis. Score = 223 bits (567), Expect = 6e-57, mRNA sequence.    46   0.74   1
DR784032| MGC86306 protein - Xenopus laevis. Score = 223 bits (567), Expect = 5e-57, mRNA sequence.    46   0.74   1
AC168695|AC168695.2 Strongylocentrotus purpuratus clone R3-3014F22, WORKING DRAFT SEQUENCE, 28 unordered pieces.    46   0.74   1
dna update 2005.12. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 408,072,102
protein update 2009. 4.14
PSORT 

 psg: 0.48  gvh: 0.19  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHA162 is nuc
5' end seq. ID SHA162F
5' end seq. 
>SHA162F.Seq
ATTTTTAGTCAGGATACCACTGCATTTAAAAAATAATATTGAAATAAAAATAAAAATAAA
AATAAAAAAAATAAAAGATCTATCCATGTTTGGCTATAATTATATATTTATATAATATAA
AAATAAATAAAAAATAAAAATAAATAAATAATAATAATAACTATAATAACAGTAATAATA
AAATGTATAATTTTTTTGATAGAATCAAAGCGCCTCTATCGGAATATAAAAGGTATGCAG
CGAATCATAAGAAAGATGATGATTTTACAGATATTGAGGATAAAATAAATTGTGGACAAT
TTCCGAATGAATATGGTAGTAATGCAATCGAGTTACCAAATTCACCTACATATAATAATA
ATAATAATAATAATAATGGTTCACCAAACGTTTTAAAACAATCTCAATATATAAGTTTTA
TAAATCCATTATCATTACCATCATCATTGATACCACCACCACCAAATTATACATCACAAC
AAAATCTAAGTGATGTAATGAGTAATAATGGTGGTGGTAGNNNNNNNNNN
Length of 5' end seq. 530
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -