>SHA159 (SHA159Q) /CSM/SH/SHA1-C/SHA159Q.Seq.d/
XXXXXXXXXXGTTGATGTTGCAGAGAATGATGTAAAATTACCAAATGGTGACATTGTCGA
AAGTGGTCTCATCTTTAGAAATAACTTCCATCTCAATCCATTATGTAATGCCGATATCTT
TGTACCATGCGGTGGTAGACCAGAATCTGTACAATTGACAAATGTCGATAAAATGTTCAC
TGCAACCGGTGAATCTCGTTTCCCAATCATCGTTGAAGGTGCTAATTTATTCTTTACTCA
AAAGGCAAGATTAATGATCGAAGAGAAGGGTGCTATCATCTTTAAGGATGCCTCTGCCAA
TAAAGGTGGTGTCACTTCTTCCTCTTTGGAGGTCTTGGCCGCTTTGGCTTTGAATGATGA
AGAATTCGATAGACATATGTGTGTCAAGGATAATGTAGTACCAGAGTTTTATGAAAATTA
CATTAAAGACGTTCATCATACCATTGAATCAAATGCTCGTTTAGAGTTTGAATGTATTTG
GAGTGAACATGAATCAACTAAAACTCCACGTTCAATCCTTTCCGATCTCTTATCAAATAA
AATCAATTCACTCAATGATTCAATTCAAACCTCTTCCCTTTGGACTGATCAACCACTCAG
ACGTAAAATCATCTCTGCTGCTTGTCCAAAGGTTTTATTAAATCTTTTAGGTGTTGATAA
AATTATGGAACGTGTACCAGAACCTT

---DVAENDVKLPNGDIVESGLIFRNNFHLNPLCNADIFVPCGGRPESVQLTNVDKMFTA
TGESRFPIIVEGANLFFTQKARLMIEEKGAIIFKDASANKGGVTSSSLEVLAALALNDEE
FDRHMCVKDNVVPEFYENYIKDVHHTIESNARLEFECIWSEHESTKTPRSILSDLLSNKI
NSLNDSIQTSSLWTDQPLRRKIISAACPKVLLNLLGVDKIMERVPEP

Frame A:
---lmlqrmm*nyqmvtlskvvssleitsisihyvmpislyhavvdqnlyn*qmsikcsl
qpvnlvsqsslkvliysllkrqd**skrrvlsslrmplpikvvsllplwrswplwl*mmk
nsidicvsrim*yqsfmkitlktfiiplnqmlv*slnvfgvnmnqlklhvqsfpisyqik
sihsmiqfkplpfglinhsdvksslllvqrfy*if*vliklwnvyqnl


Frame B:
---*ccre*ckitkw*hcrkwshl*k*lpsqsim*crylctmrw*trictidkcr*nvhc
nr*isfpnhr*rc*filyskgkindrregcyhl*gclcq*rwchfflfgglgrfgfe**r
ir*tyvcqg*cstrvl*klh*rrssyh*ikcsfrv*myle*t*in*nstfnpfrslik*n
qftq*fnsnlfpld*sttqt*nhlcclskgfiksfrc**nygtctrt


Frame C:
---DVAENDVKLPNGDIVESGLIFRNNFHLNPLCNADIFVPCGGRPESVQLTNVDKMFTA
TGESRFPIIVEGANLFFTQKARLMIEEKGAIIFKDASANKGGVTSSSLEVLAALALNDEE
FDRHMCVKDNVVPEFYENYIKDVHHTIESNARLEFECIWSEHESTKTPRSILSDLLSNKI
NSLNDSIQTSSLWTDQPLRRKIISAACPKVLLNLLGVDKIMERVPEP

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA159 (SHA159Q) /CSM/SH/SHA1-C/SHA159Q.Seq.d/                       1340   0.0
CHR402 (CHR402Q) /CSM/CH/CHR4-A/CHR402Q.Seq.d/                       1328   0.0
AHO238 (AHO238Q) /CSM/AH/AHO2-B/AHO238Q.Seq.d/                       1328   0.0
AFO446 (AFO446Q) /CSM/AF/AFO4-B/AFO446Q.Seq.d/                       1189   0.0
SHC892 (SHC892Q) /CSM/SH/SHC8-D/SHC892Q.Seq.d/                       1172   0.0
AFH504 (AFH504Q) /CSM/AF/AFH5-A/AFH504Q.Seq.d/                       1172   0.0
AHF621 (AHF621Q) /CSM/AH/AHF6-A/AHF621Q.Seq.d/                       1170   0.0
AHB295 (AHB295Q) /CSM/AH/AHB2-D/AHB295Q.Seq.d/                       1170   0.0
SHE719 (SHE719Q) /CSM/SH/SHE7-A/SHE719Q.Seq.d/                       1168   0.0
CHR279 (CHR279Q) /CSM/CH/CHR2-D/CHR279Q.Seq.d/                       1168   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CZ282233|CZ282233.1 cp21f10.f Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp21f10, genomic survey sequence.    46   2e-08  2
AL404890|AL404890.1 T3 end of clone AU0AA001B12 of library AU0AA from strain CBS 3082 of Saccharomyces kluyveri.    50   1e-06  2
AQ946351|AQ946351.1 Sheared DNA-44O5.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-44O5, genomic survey sequence.    58   1e-05  2
AZ124420|AZ124420.1 s073r S. servazzii genomic library Saccharomyces servazzii genomic, genomic survey sequence.    40   2e-05  3
CR382124|CR382124.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL  Y-1140 of Kluyveromyces lactis.    48   2e-04  2
CQ438609|CQ438609.1 Sequence 4369 from Patent WO0192523.           40   0.001  2
Z74263|Z74263.1 S.cerevisiae chromosome IV reading frame ORF YDL215c.    40   0.002  3
X72015|X72015.1 S.cerevisiae GDH2 gene for NAD-glutamate dehydrogenase.    40   0.002  3
AF095907|AF095907.1 Trypanosoma brucei glutamate dehydrogenase (GDH) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    50   0.015  2
AR548251|AR548251.1 Sequence 3382 from patent US 6747137.          46   0.034  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007154_641(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...   241   1e-62
AY223544_1(AY223544|pid:none) Emericella nidulans NAD dependent ...   238   1e-61
AM270040_65(AM270040|pid:none) Aspergillus niger contig An02c046...   229   6e-59
CU633900_481(CU633900|pid:none) Podospora anserina genomic DNA c...   228   2e-58
DENCED(A92284;A92215;A32204;A00378)glutamate dehydrogenase (EC 1...   227   2e-58
AJ310444_1(AJ310444|pid:none) Gibberella fujikuroi gdh1 gene for...   214   2e-54
CR940353_806(CR940353|pid:none) Theileria annulata strain Ankara...   204   1e-51
AE017344_16(AE017344|pid:none) Cryptococcus neoformans var. neof...   202   7e-51
FM992689_715(FM992689|pid:none) Candida dubliniensis CD36 chromo...   193   3e-48
CT005254_103(CT005254|pid:none) Leishmania major strain Friedlin...   183   4e-45

 psg: 0.75  gvh: 0.42  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SHA159 is nuc

>SHA159Z.Seq
NNNNNNNNNNGTTGATGTTGCAGAGAATGATGTAAAATTACCAAATGGTGACATTGTCGA
AAGTGGTCTCATCTTTAGAAATAACTTCCATCTCAATCCATTATGTAATGCCGATATCTT
TGTACCATGCGGTGGTAGACCAGAATCTGTACAATTGACAAATGTCGATAAAATGTTCAC
TGCAACCGGTGAATCTCGTTTCCCAATCATCGTTGAAGGTGCTAATTTATTCTTTACTCA
AAAGGCAAGATTAATGATCGAAGAGAAGGGTGCTATCATCTTTAAGGATGCCTCTGCCAA
TAAAGGTGGTGTCACTTCTTCCTCTTTGGAGGTCTTGGCCGCTTTGGCTTTGAATGATGA
AGAATTCGATAGACATATGTGTGTCAAGGATAATGTAGTACCAGAGTTTTATGAAAATTA
CATTAAAGACGTTCATCATACCATTGAATCAAATGCTCGTTTAGAGTTTGAATGTATTTG
GAGTGAACATGAATCAACTAAAACTCCACGTTCAATCCTTTCCGATCTCTTATCAAATAA
AATCAATTCACTCAATGATTCAATTCAAACCTCTTCCCTTTGGACTGATCAACCACTCAG
ACGTAAAATCATCTCTGCTGCTTGTCCAAAGGTTTTATTAAATCTTTTAGGTGTTGATAA
AATTATGGAACGTGTACCAGAACCTT