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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA109
Library SH
(Link to library)
Clone ID SHA109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID SHA109P
(Link to Original site)
Representative DNA sequence 
>SHA109 (SHA109Q) /CSM/SH/SHA1-A/SHA109Q.Seq.d/
TCAAATTCAACTGGTTGTGTAAATACTCCAATTTCCTGTGACGATAATAATCCATGTACT
GTTGATTCTTGCGATGACTTAACTGGTTGTTGCAATACTCCAATCAATGCCATGTACCAT
CGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATAA
CAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATAC
TGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCAACTGGTGTTTCCCATAC
CCCAATAAACTGTGATGATAATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGG
TTGTGTAAATACTCCAATTAACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCAA
TAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGT
CGATGCCTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAA
CAAATGTACAATTGATGCATGTACCAAAGAANGTGGTGTAACTCATACCCCAGTCAATAC
TGATGATAACAATGCCTGTACAATTGATGCATGTACAAAAGAAAGTGGGGTAACTCATAC
TCCAGTCAATACTGATGATAACAATGCTTGTACCCTTGACTTCCTGTTCACCATCAACCT
GGCGTTTCCCACACCCCCAATTAACTGNGATGATAGNAATCCATGTACCGTANACTCATG
TTCCAAATTCAACCGGGTTGGTNNCAACACTCCCATCAATGGTGGANGGANAANAAACCC
ATNTNCCGXXXXXXXXXXACTCATACACCAATCAATACAGATGATAATGACAAATGTACA
TTAGATGCTTGTTCACCAAAGACTGGTGTAACTCATACACCAATCAATTGTGATGATGGA
AACAAATGTACAATCAATAGTTGTTCACCATCAGTTGGTTGTATCTCAACACCAGTTTCA
TGTCCAAAACCAAAAGATAAATGTTCAATCTCTCAATGTGATTCAGCCAAAGGTTGCATC
GAAGCCCCAATGAATTGTACCTCTGATAAATGTAATGAAGCATCATGTTGTGATGGTGTT
TGTACCTCAAAACCAATTAGCTGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAAAATGT
GATTTAATTAAAGGTTGTACCGTCTCAAATGTAGTATGTGATGATGGTAATGCTTGTACC
GAAGATTCATGTTGTTCAGACACTGGTAAATGTCAATTCGAACCAATCAAACTTCCAAAG
AATAAAAACAAATGTATCATTTCAAAATGTGATCCAATTAAAGGTACAATCACCAACAGT
ACCGTAAACTGTGAATGTGATGACCTTTGTAACATTGGTGAATGTTGTGAAGATACAGGA
AAATGTAATTACAGACAAAAAGATTGTGATGATAATAATCCAAAAACAGCTGATAGTTGC
GATTCCAAGACTGGTAAATGTATTAACAAACCATATAATGTTATCACAAGTGGTTCTAAT
TTAATCTCTGGTTTAATTGGTGGTCTCATTGGTGGTGGTACAGGAGGTAAAGGTNATTGC
AAAACTGTAAAAATTAAAAACTCTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
qiqlvv*ilqfpvtiiihvllilamt*LVVAILQSMPCTIDACTKSTGVTHTPVNVDDNN
KCTIDTCTKEGGVTHTPVNTDDNNACTLDSCSPSTGVSHTPINCDDNNKCTVDSCSNSTG
CVNTPINCDDSNPCTVDSCNNSTGCVNTPVNVDDNNPCTVDACTKSTGVTHTPVNVDDNN
KCTIDACTKEXGVTHTPVNTDDNNACTIDACTKESGVTHTPVNTDDNNACTLDFLFTINL
AFPTPPINXDDXNPCTVXSCSKFNRVGXNTPINGGXXXNPXX---

---THTPINTDDNDKCTLDACSPKTGVTHTPINCDDGNKCTINSCSPSVGCISTPVSCPK
PKDKCSISQCDSAKGCIEAPMNCTSDKCNEASCCDGVCTSKPISCPKPKNKCQVAKCDLI
KGCTVSNVVCDDGNACTEDSCCSDTGKCQFEPIKLPKNKNKCIISKCDPIKGTITNSTVN
CECDDLCNIGECCEDTGKCNYRQKDCDDNNPKTADSCDSKTGKCINKPYNVITSGSNLIS
GLIGGLIGGGTGGKGXCKTVKIKNSF
Translated Amino Acid sequence (All Frames) 
Frame A:
snstgcvntpiscddnnpctvdscddltgccntpinamyhrcly*inrcysypsqcr***
qmyn*ymyqrrwcnsyssqy***qclyp*flltinwcfpypnkl*****mycrfmfklnw
lckysn*l*r**smyrrlmq*fnwlckhssqc****smyrrclyqinrcysypsqcr**q
qmyn*cmyqrxwcnsypsqy***qclyn*cmykrkwgnsyssqy***qclyp*lpvhhqp
gvshtpn*lx**xsmyrxlmfqiqpgwxqhshqwwxxxkpxx---

---THTPINTDDNDKCTLDACSPKTGVTHTPINCDDGNKCTINSCSPSVGCISTPVSCPK
PKDKCSISQCDSAKGCIEAPMNCTSDKCNEASCCDGVCTSKPISCPKPKNKCQVAKCDLI
KGCTVSNVVCDDGNACTEDSCCSDTGKCQFEPIKLPKNKNKCIISKCDPIKGTITNSTVN
CECDDLCNIGECCEDTGKCNYRQKDCDDNNPKTADSCDSKTGKCINKPYNVITSGSNLIS
GLIGGLIGGGTGGKGXCKTVKIKNSF

Frame B:
qiqlvv*ilqfpvtiiihvllilamt*LVVAILQSMPCTIDACTKSTGVTHTPVNVDDNN
KCTIDTCTKEGGVTHTPVNTDDNNACTLDSCSPSTGVSHTPINCDDNNKCTVDSCSNSTG
CVNTPINCDDSNPCTVDSCNNSTGCVNTPVNVDDNNPCTVDACTKSTGVTHTPVNVDDNN
KCTIDACTKEXGVTHTPVNTDDNNACTIDACTKESGVTHTPVNTDDNNACTLDFLFTINL
AFPTPPINXDDXNPCTVXSCSKFNRVGXNTPINGGXXXNPXX---

---lihqsiqmimtnvh*mlvhqrlv*lihqsivmmetnvqsivvhhqlvvsqhqfhvqn
qkinvqslnviqpkvaskpq*ivplinvmkhhvvmvfvpqnqlavqnqrisvklqnvi*l
kvvpsqm*yvmmvmlvpkihvvqtlvnvnsnqsnfqriktnvsfqnviqlkvqsptvp*t
vnvmtfvtlvnvvkiqenvitdkkivmiiiqkqlivaiprlvnvltnhimlsqvvli*sl
v*lvvslvvvqevkviakl*klktl

Frame C:
kfnwlckysnfl*r**smyc*flr*lnwllqysnqchvpsmpvlnqqvllipqsm*miit
nvqlihvpkkvv*lilqsilmitmpvplipahhqlvfpipq*tvmiiinvl*ihvqtqlv
v*ilqltvtivihvp*thaiiqlvv*tlqsmlmiiihvpsmpvpnqqvllipqsm*mitt
nvqlmhvpkxvv*lipqsilmitmpvqlmhvqkkvg*lilqsilmitmlvpltscspstw
rfphpqltxmixihvpxthvpnstglvxtlpsmvxgxxthxp---

---sytnqyr***qmyirclftkdwcnsytnql**wkqmynq*lftiswlylntsfmskt
kr*mfnlsm*fsqrlhrspnelyl**m**siml*wclylktn*lsktke*vssckm*fn*
rlyrlkcsm**w*clyrrfmlfrhw*msirtnqtske*kqmyhfkm*sn*rynhqqyrkl
*m**pl*hw*ml*ryrkm*lqtkrl****skns**lrfqdw*my*qti*cyhkwf*fnlw
fnwwshwwwyrr*rxlqnckn*klf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA109 (SHA109Q) /CSM/SH/SHA1-A/SHA109Q.Seq.d/                       3134   0.0
SHA152 (SHA152Q) /CSM/SH/SHA1-C/SHA152Q.Seq.d/                       1518   0.0
SHC394 (SHC394Q) /CSM/SH/SHC3-D/SHC394Q.Seq.d/                       1507   0.0
CHR684 (CHR684Q) /CSM/CH/CHR6-D/CHR684Q.Seq.d/                       1507   0.0
CFC807 (CFC807Q) /CSM/CF/CFC8-A/CFC807Q.Seq.d/                       1507   0.0
CHM421 (CHM421Q) /CSM/CH/CHM4-A/CHM421Q.Seq.d/                       1505   0.0
CFC542 (CFC542Q) /CSM/CF/CFC5-B/CFC542Q.Seq.d/                       1499   0.0
SHA221 (SHA221Q) /CSM/SH/SHA2-A/SHA221Q.Seq.d/                       1495   0.0
SHA257 (SHA257Q) /CSM/SH/SHA2-C/SHA257Q.Seq.d/                       1493   0.0
CHS294 (CHS294Q) /CSM/CH/CHS2-D/CHS294Q.Seq.d/                       1481   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               50   3e-24  8
CK991559|CK991559.1 EST0111 Eyestalk cDNA library Penaeus monodon cDNA clone ES-N-S03-555-W 5' similar to Histidine-rich glycoprotein precursor (Plasmodium lophurae), mRNA sequence.    30   0.030  4
BQ739629|BQ739629.1 PfESToab48c05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9U0J6 Q9U0J6 HYPOTHETICAL 312.5 KD PROTEIN. ;, mRNA sequence.    30   0.053  4
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50   0.15   1
AF134683|AF134683.1 Plasmodium falciparum strain UNK1 CG2 omega repeat (cg2) gene, partial cds.    34   0.30   3
BX231032|BX231032.1 Danio rerio genomic clone DKEY-254O18, genomic survey sequence.    30   0.45   5
AF467890|AF467890.1 Mus musculus chromosome 17 clone 160i3 strain C57BL/6J, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    48   0.60   1
AC154238|AC154238.1 Mus musculus chromosome 17 clone RP24-162O23, WORKING DRAFT SEQUENCE, 9 unordered pieces.    48   0.60   1
AC138642|AC138642.10 Mus musculus chromosome 3, clone RP23-21O7, complete sequence.    48   0.60   1
AC122491|AC122491.3 Mus musculus BAC clone RP24-390D3 from chromosome 3, complete sequence.    48   0.60   1
dna update 2005.12. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   422   0.0
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   310   e-141
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   310   e-140
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   267   1e-76
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   226   3e-74
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   224   2e-64
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                104   3e-40
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                124   1e-26
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                114   1e-23
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   101   9e-20
protein update 2009. 4.14
PSORT 

 psg: 0.88  gvh: 0.52  alm: 0.37  top: 0.50  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SHA109 is cyt
5' end seq. ID SHA109F
5' end seq. 
>SHA109F.Seq
TCAAATTCAACTGGTTGTGTAAATACTCCAATTTCCTGTGACGATAATAATCCATGTACT
GTTGATTCTTGCGATGACTTAACTGGTTGTTGCAATACTCCAATCAATGCCATGTACCAT
CGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATAA
CAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATAC
TGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCAACTGGTGTTTCCCATAC
CCCAATAAACTGTGATGATAATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGG
TTGTGTAAATACTCCAATTAACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCAA
TAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGT
CGATGCCTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAA
CAAATGTACAATTGATGCATGTACCAAAGAANGTGGTGTAACTCATACCCCAGTCAATAC
TGATGATAACAATGCCTGTACAATTGATGCATGTACAAAAGAAAGTGGGGTAACTCATAC
TCCAGTCAATACTGATGATAACAATGCTTGTACCCTTGACTTCCTGTTCACCATCAACCT
GGCGTTTCCCACACCCCCAATTAACTGNGATGATAGNAATCCATGTACCGTANACTCATG
TTCCAAATTCAACCGGGTTGGTNNCAACACTCCCATCAATGGTGGANGGANAANAAACCC
ATNTNCCGNNNNNNNNNN
Length of 5' end seq. 858
3' end seq. ID SHA109Z
3' end seq. 
>SHA109Z.Seq
NNNNNNNNNNACTCATACACCAATCAATACAGATGATAATGACAAATGTACATTAGATGC
TTGTTCACCAAAGACTGGTGTAACTCATACACCAATCAATTGTGATGATGGAAACAAATG
TACAATCAATAGTTGTTCACCATCAGTTGGTTGTATCTCAACACCAGTTTCATGTCCAAA
ACCAAAAGATAAATGTTCAATCTCTCAATGTGATTCAGCCAAAGGTTGCATCGAAGCCCC
AATGAATTGTACCTCTGATAAATGTAATGAAGCATCATGTTGTGATGGTGTTTGTACCTC
AAAACCAATTAGCTGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAAAATGTGATTTAAT
TAAAGGTTGTACCGTCTCAAATGTAGTATGTGATGATGGTAATGCTTGTACCGAAGATTC
ATGTTGTTCAGACACTGGTAAATGTCAATTCGAACCAATCAAACTTCCAAAGAATAAAAA
CAAATGTATCATTTCAAAATGTGATCCAATTAAAGGTACAATCACCAACAGTACCGTAAA
CTGTGAATGTGATGACCTTTGTAACATTGGTGAATGTTGTGAAGATACAGGAAAATGTAA
TTACAGACAAAAAGATTGTGATGATAATAATCCAAAAACAGCTGATAGTTGCGATTCCAA
GACTGGTAAATGTATTAACAAACCATATAATGTTATCACAAGTGGTTCTAATTTAATCTC
TGGTTTAATTGGTGGTCTCATTGGTGGTGGTACAGGAGGTAAAGGTNATTGCAAAACTGT
AAAAATTAAAAACTCTTTT
Length of 3' end seq. 799
Connected seq. ID SHA109P
Connected seq. 
>SHA109P.Seq
TCAAATTCAACTGGTTGTGTAAATACTCCAATTTCCTGTGACGATAATAATCCATGTACT
GTTGATTCTTGCGATGACTTAACTGGTTGTTGCAATACTCCAATCAATGCCATGTACCAT
CGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATAA
CAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATAC
TGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCAACTGGTGTTTCCCATAC
CCCAATAAACTGTGATGATAATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGG
TTGTGTAAATACTCCAATTAACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCAA
TAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGT
CGATGCCTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAA
CAAATGTACAATTGATGCATGTACCAAAGAANGTGGTGTAACTCATACCCCAGTCAATAC
TGATGATAACAATGCCTGTACAATTGATGCATGTACAAAAGAAAGTGGGGTAACTCATAC
TCCAGTCAATACTGATGATAACAATGCTTGTACCCTTGACTTCCTGTTCACCATCAACCT
GGCGTTTCCCACACCCCCAATTAACTGNGATGATAGNAATCCATGTACCGTANACTCATG
TTCCAAATTCAACCGGGTTGGTNNCAACACTCCCATCAATGGTGGANGGANAANAAACCC
ATNTNCCG----------ACTCATACACCAATCAATACAGATGATAATGACAAATGTACA
TTAGATGCTTGTTCACCAAAGACTGGTGTAACTCATACACCAATCAATTGTGATGATGGA
AACAAATGTACAATCAATAGTTGTTCACCATCAGTTGGTTGTATCTCAACACCAGTTTCA
TGTCCAAAACCAAAAGATAAATGTTCAATCTCTCAATGTGATTCAGCCAAAGGTTGCATC
GAAGCCCCAATGAATTGTACCTCTGATAAATGTAATGAAGCATCATGTTGTGATGGTGTT
TGTACCTCAAAACCAATTAGCTGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAAAATGT
GATTTAATTAAAGGTTGTACCGTCTCAAATGTAGTATGTGATGATGGTAATGCTTGTACC
GAAGATTCATGTTGTTCAGACACTGGTAAATGTCAATTCGAACCAATCAAACTTCCAAAG
AATAAAAACAAATGTATCATTTCAAAATGTGATCCAATTAAAGGTACAATCACCAACAGT
ACCGTAAACTGTGAATGTGATGACCTTTGTAACATTGGTGAATGTTGTGAAGATACAGGA
AAATGTAATTACAGACAAAAAGATTGTGATGATAATAATCCAAAAACAGCTGATAGTTGC
GATTCCAAGACTGGTAAATGTATTAACAAACCATATAATGTTATCACAAGTGGTTCTAAT
TTAATCTCTGGTTTAATTGGTGGTCTCATTGGTGGTGGTACAGGAGGTAAAGGTNATTGC
AAAACTGTAAAAATTAAAAACTCTTTT
Length of connected seq. 1637
Full length Seq ID -
Full length Seq. -
Length of full length seq. -