SFL485
Library SF
(Link to library)
Clone ID SFL485
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15324-1
Original site URL
Representative seq. ID SFL485P
(Link to Original site)
Representative DNA sequence
>SFL485 (SFL485Q) /CSM/SF/SFL4-D/SFL485Q.Seq.d/
ATTACATAGTTCATGTCAATCAGTTAGTTTAAATGCANATGGATTTGGAATTGCATGGTA
TGTTCCANATATTACACCAATTCCAGGNGTNTTTAAAGATATTACNCCAGCATGGTCAAA
TATTAATCTTANACAATTGGCTCGNGTAACCAANAGNGGTTGTATAGCGGCNCATATTAN
AGCAGCAAGNGCAGGNGCAATTGTAAATACTAATTGTCATCCATTTACATTTANAAACTT
TAGTTGGATGCATAATGGTTGTATACCATTTTATAATCATTTAAAGAGAGATNTTTATTC
AATGATTTCCGATTCAGCTTTTGAATTAATTAAAGGTACAXXXXXXXXXXTTTATTCAAT
GATTTCCCGATTCAGCTTTTGAATTAATTAAAGGTACAACAGATAGTGAGTTATTATTTG
CATTGTTTATATCAAACTATGAAAAAGAGATTGGATACAAAGCAGAGAAAGCAAAGACAA
ATGGCACAGTTTATTATTCAACCCATTGTGCATTGGAGCCTGAAGAGAAACCTTATCCAT
CACATGTAAACAATACTGAGATAATACCAAAAGTATTACAAGAAACTATATTCCAAATTC
ACGAATTACTCTTACAATATGAATTAAAGAATGGTTTATTATCAAATAATACTGGTAGTG
AAGGTAATGTTAATGGTAATAATGGTAGTAATGGTGCTGGTGCAAGTAATAGTTGTGGTG
GTAGTGGTAGTAGTGGTAATAACAGTCCAACTGACTTATTGATGGAAGGTGCTTCATTAC
GTCAAACAAATTCATGTTGTAAATTAAATTTGGCAGTCACTGATGGTTTCACTGTGGTTG
CAACTCGTTATGTCACTGGTATGCCTGAAGCTGCCCATTCACTCTATTGGAGTCGTGGTT
CAACTATTAAATTTGATGATGGTCATTGTCAATTAGGTCGTTCAACTGATTCTTCTCCTC
ATTCAAAATCATATTCTGAATCTTTAGTTATATCTTCTGAACCTTTAGCTTCGATTTCCA
ATGGAACCTGTACCTGTAAATCAATTGAATGGNATTCTTCGGTATTTTTCAATNAACCAA
T
sequence update 2001. 6. 1
Translated Amino Acid sequence
LHSSCQSVSLNAXGFGIAWYVPXITPIPGVFKDITPAWSNINLXQLARVTXXGCIAAHIX
AAXAGAIVNTNCHPFTFXNFSWMHNGCIPFYNHLKRDXYSMISDSAFELIKGT---

---LFNDFPIQLLN*lkvqqivsyylhclyqtmkkrldtkqrkqrqmaqfiiqpivhwsl
krnlihhm*tilr*yqkyykklyskftnysynmn*rmvyyqiilvvkvmlmvimvvmvlv
qvivvvvvvvvvitvqlty*wkvlhyvkqihvvn*iwqslmvslwlqlvmslvclklpih
sigvvvqllnlmmvivn*vvqlillliqnhilnl*lyllnl*lrfpmepvpvnqlngilr
yfsxnq


Translated Amino Acid sequence (All Frames)
Frame A:
it*fmsis*fkcxwiwncmvcsxyytnsrxx*ryyxsmvky*sxtigsxnqxxlysgxyx
sskxrxncky*lssiyixkl*lda*wlytil*sfkerxlfndfrfsf*in*ry---

---fiq*fpdsafelikgttdsellfalfisnyekeigykaekaktngtvyysthcalep
eekpypshvnnteiipkvlqetifqihelllqyelkngllsnntgsegnvngnngsngag
asnscggsgssgnnsptdllmegaslrqtnsccklnlavtdgftvvatryvtgmpeaahs
lywsrgstikfddghcqlgrstdssphsksyseslvisseplasisngtctcksiewxss
vffnxp

Frame B:
LHSSCQSVSLNAXGFGIAWYVPXITPIPGVFKDITPAWSNINLXQLARVTXXGCIAAHIX
AAXAGAIVNTNCHPFTFXNFSWMHNGCIPFYNHLKRDXYSMISDSAFELIKGT---

---LFNDFPIQLLN*lkvqqivsyylhclyqtmkkrldtkqrkqrqmaqfiiqpivhwsl
krnlihhm*tilr*yqkyykklyskftnysynmn*rmvyyqiilvvkvmlmvimvvmvlv
qvivvvvvvvvvitvqlty*wkvlhyvkqihvvn*iwqslmvslwlqlvmslvclklpih
sigvvvqllnlmmvivn*vvqlillliqnhilnl*lyllnl*lrfpmepvpvnqlngilr
yfsxnq

Frame C:
yivhvnqlv*mxmdlelhgmfxilhqfqxxlkilxqhgqililxnwlx*pxxvv*rxilx
qqxqxql*ilivihlhlxtlvgcimvvyhfiii*rexfiq*fpiqlln*lkv---

---ysmisrfsf*in*rynr**viicivyikl*krdwiqsreskdkwhsllfnplciga*
retlsitckqy*dntksitrnyipnsritlti*ikewfiik*yw**r*c*w**w**wcwc
k**lww*w**w**qsn*lidgrcfitsnkfml*ikfgsh*wfhcgcnslchwya*scpft
lleswfny*i**wslsirsfn*ffssfkiif*ifsyif*tfsfdfqwnlyl*in*mxffg
ifqxtn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL485 (SFL485Q) /CSM/SF/SFL4-D/SFL485Q.Seq.d/ 1982 0.0
CFI816 (CFI816Q) /CSM/CF/CFI8-A/CFI816Q.Seq.d/ 1330 0.0
CHD638 (CHD638Q) /CSM/CH/CHD6-B/CHD638Q.Seq.d/ 1296 0.0
CHA580 (CHA580Q) /CSM/CH/CHA5-D/CHA580Q.Seq.d/ 1255 0.0
FC-BM24 (FC-BM24Q) /CSM/FC/FC-BM/FC-BM24Q.Seq.d/ 1057 0.0
SSM327 (SSM327Q) /CSM/SS/SSM3-B/SSM327Q.Seq.d/ 989 0.0
CFJ657 (CFJ657Q) /CSM/CF/CFJ6-C/CFJ657Q.Seq.d/ 957 0.0
CFH825 (CFH825Q) /CSM/CF/CFH8-B/CFH825Q.Seq.d/ 533 e-150
SSK862 (SSK862Q) /CSM/SS/SSK8-C/SSK862Q.Seq.d/ 186 5e-46
CHA395 (CHA395Q) /CSM/CH/CHA3-D/CHA395Q.Seq.d/ 186 5e-46

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 60 8e-09 19
AJ314911|AJ314911.1 Dictyostelium discoideum DrnA gene for putative RNaseIII, exons 1-3. 60 9e-09 5
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 42 8e-07 14
AC115510|AC115510.4 Rattus norvegicus clone CH230-383C9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 50 5e-06 4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 40 3e-05 13
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 44 5e-05 13
AL928975|AL928975.10 Zebrafish DNA sequence from clone CH211-133N4. 60 7e-05 1
AC095424|AC095424.4 Rattus norvegicus clone CH230-7A8, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces. 50 1e-04 7
AC105547|AC105547.5 Rattus norvegicus clone CH230-201N9, WORKING DRAFT SEQUENCE, 3 unordered pieces. 48 2e-04 2
AC096453|AC096453.5 Rattus norvegicus clone CH230-41P1, WORKING DRAFT SEQUENCE, 2 unordered pieces. 48 2e-04 2
dna update 2004. 1. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM920427_1520(AM920427|pid:none) Penicillium chrysogenum Wiscons... 66 1e-17
AM270167_9(AM270167|pid:none) Aspergillus niger contig An08c0120... 67 1e-16
AP007154_317(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 63 2e-15
CP000606_1771(CP000606|pid:none) Shewanella loihica PV-4, comple... 82 2e-14
CP000497_667(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 72 2e-13
CR628336_2664(CR628336|pid:none) Legionella pneumophila str. Par... 72 2e-13
CP000633_289(CP000633|pid:none) Agrobacterium vitis S4 chromosom... 79 3e-13
AL591688_358(AL591688|pid:none) Sinorhizobium meliloti 1021 comp... 75 4e-13
AP011115_3642(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 75 5e-13
CP000439_1122(CP000439|pid:none) Francisella tularensis subsp. n... 74 9e-13
protein update 2009. 5.28
PSORT

psg: 0.90 gvh: 0.50 alm: 0.37 top: 0.43 tms: 0.00 mit: 0.27 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SFL485 is cyt

5' end seq. ID SFL485F
5' end seq.
>SFL485F.Seq
ATTACATAGTTCATGTCAATCAGTTAGTTTAAATGCANATGGATTTGGAATTGCATGGTA
TGTTCCANATATTACACCAATTCCAGGNGTNTTTAAAGATATTACNCCAGCATGGTCAAA
TATTAATCTTANACAATTGGCTCGNGTAACCAANAGNGGTTGTATAGCGGCNCATATTAN
AGCAGCAAGNGCAGGNGCAATTGTAAATACTAATTGTCATCCATTTACATTTANAAACTT
TAGTTGGATGCATAATGGTTGTATACCATTTTATAATCATTTAAAGAGAGATNTTTATTC
AATGATTTCCGATTCAGCTTTTGAATTAATTAAAGGTACA----------
Length of 5' end seq. 340
3' end seq. ID SFL485Z
3' end seq.
>SFL485Z.Seq
----------TTTATTCAATGATTTCCCGATTCAGCTTTTGAATTAATTAAAGGTACAAC
AGATAGTGAGTTATTATTTGCATTGTTTATATCAAACTATGAAAAAGAGATTGGATACAA
AGCAGAGAAAGCAAAGACAAATGGCACAGTTTATTATTCAACCCATTGTGCATTGGAGCC
TGAAGAGAAACCTTATCCATCACATGTAAACAATACTGAGATAATACCAAAAGTATTACA
AGAAACTATATTCCAAATTCACGAATTACTCTTACAATATGAATTAAAGAATGGTTTATT
ATCAAATAATACTGGTAGTGAAGGTAATGTTAATGGTAATAATGGTAGTAATGGTGCTGG
TGCAAGTAATAGTTGTGGTGGTAGTGGTAGTAGTGGTAATAACAGTCCAACTGACTTATT
GATGGAAGGTGCTTCATTACGTCAAACAAATTCATGTTGTAAATTAAATTTGGCAGTCAC
TGATGGTTTCACTGTGGTTGCAACTCGTTATGTCACTGGTATGCCTGAAGCTGCCCATTC
ACTCTATTGGAGTCGTGGTTCAACTATTAAATTTGATGATGGTCATTGTCAATTAGGTCG
TTCAACTGATTCTTCTCCTCATTCAAAATCATATTCTGAATCTTTAGTTATATCTTCTGA
ACCTTTAGCTTCGATTTCCAATGGAACCTGTACCTGTAAATCAATTGAATGGNATTCTTC
GGTATTTTTCAATNAACCAAT
Length of 3' end seq. 731
Connected seq. ID SFL485P
Connected seq.
>SFL485P.Seq
ATTACATAGTTCATGTCAATCAGTTAGTTTAAATGCANATGGATTTGGAATTGCATGGTA
TGTTCCANATATTACACCAATTCCAGGNGTNTTTAAAGATATTACNCCAGCATGGTCAAA
TATTAATCTTANACAATTGGCTCGNGTAACCAANAGNGGTTGTATAGCGGCNCATATTAN
AGCAGCAAGNGCAGGNGCAATTGTAAATACTAATTGTCATCCATTTACATTTANAAACTT
TAGTTGGATGCATAATGGTTGTATACCATTTTATAATCATTTAAAGAGAGATNTTTATTC
AATGATTTCCGATTCAGCTTTTGAATTAATTAAAGGTACA----------TTTATTCAAT
GATTTCCCGATTCAGCTTTTGAATTAATTAAAGGTACAACAGATAGTGAGTTATTATTTG
CATTGTTTATATCAAACTATGAAAAAGAGATTGGATACAAAGCAGAGAAAGCAAAGACAA
ATGGCACAGTTTATTATTCAACCCATTGTGCATTGGAGCCTGAAGAGAAACCTTATCCAT
CACATGTAAACAATACTGAGATAATACCAAAAGTATTACAAGAAACTATATTCCAAATTC
ACGAATTACTCTTACAATATGAATTAAAGAATGGTTTATTATCAAATAATACTGGTAGTG
AAGGTAATGTTAATGGTAATAATGGTAGTAATGGTGCTGGTGCAAGTAATAGTTGTGGTG
GTAGTGGTAGTAGTGGTAATAACAGTCCAACTGACTTATTGATGGAAGGTGCTTCATTAC
GTCAAACAAATTCATGTTGTAAATTAAATTTGGCAGTCACTGATGGTTTCACTGTGGTTG
CAACTCGTTATGTCACTGGTATGCCTGAAGCTGCCCATTCACTCTATTGGAGTCGTGGTT
CAACTATTAAATTTGATGATGGTCATTGTCAATTAGGTCGTTCAACTGATTCTTCTCCTC
ATTCAAAATCATATTCTGAATCTTTAGTTATATCTTCTGAACCTTTAGCTTCGATTTCCA
ATGGAACCTGTACCTGTAAATCAATTGAATGGNATTCTTCGGTATTTTTCAATNAACCAA
T
Length of connected seq. 1071
Full length Seq ID -
Full length Seq. -
Length of full length seq. -