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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL482
Library SF
(Link to library)
Clone ID SFL482
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15494-1
Original site URL
Representative seq. ID SFL482P
(Link to Original site)
Representative DNA sequence 
>SFL482 (SFL482Q) /CSM/SF/SFL4-D/SFL482Q.Seq.d/
ATCTGCACACATATAGAAAAAATGGTTCAAAGACTTACCTACAGAAGAAGATTATCTTAC
CGTACTACTTCTAACGCTACCAAAATCGTCAAGACTCCAGGTGGTAGATTAGTATACCAA
TACATCGGTAAAACTGGTAAAGTTCCAAGATGTGGTGAATGTGGTGTCAACTTAGCCGGT
ATCCCAGCCTTAAGACCATACCAATACAAAAATCTTCCAAAATCAAGAAGAACTGTTTCA
CGTGCTTATGGTGGTAGCAAATGTGCCAAATGTGTCCGTAACAGAATCGTTCGTGCTTTC
TTAATTGAAGAACAAAAAACCGCTAAAATTGTCTTCAAGAAGCAACAAAAAGATTTAAAA
CAAAAGAAAGATAAGAAATCATCCAAATAAATGTAGTGATTAATATCAATCATTTTTTAC
TTATAAAAAAAAAAXXXXXXXXXXATCTGCACACATATAGAAAAAATGGTTCAAAGACTT
ACCTACAGAAGAAGATTATCTTACCGTACTACTTCTAACGCTACCAAAATCGTCAAGACT
CCAGGTGGTAGATTAGTATACCAATACATCGGTAAAACTGGTAAAGTTCCAAGATGTGGT
GAATGTGGTGTCAACTTAGCCGGTATCCCAGCCTTAAGACCATACCAATACAAAAATCTT
CCAAAATCAAGAAGAACTGTTTCACGTGCTTATGGTGGTAGCAAATGTGCCAAATGTGTC
CGTAACAGAATCGTTCGTGCTTTCTTAATTGAAGAACAAAAAACCGCTAAAATTGTCTTC
AAGAAGCAACAAAAAGATTTAAAACAAAAGAAAGATAAGAAATCATCCAAATAAATGT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lhtyrkngsktylqkkiilpyyf*ryqnrqdsrw*isipihr*nw*sskmw*mwcqlsry
pslktipiqksskikkncftclww*qmcqmcp*qnrscfln*rtknr*nclqeatkrfkt
ker*EIIQINVVININHFLLIKKK---

---ICTHIEKMVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVN
LAGIPALRPYQYKNLPKSRRTVSRAYGGSKCAKCVRNRIVRAFLIEEQKTAKIVFKKQQK
DLKQKKDKKSSK*m
Translated Amino Acid sequence (All Frames) 
Frame A:
icthiekmvqrltyrrrlsyrttsnatkivktpggrlvyqyigktgkvprcgecgvnlag
ipalrpyqyknlpksrrtvsrayggskcakcvrnrivraflieeqktakivfkkqqkdlk
qkkdkkssk*m**lisiifyl*kk---

---ICTHIEKMVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVN
LAGIPALRPYQYKNLPKSRRTVSRAYGGSKCAKCVRNRIVRAFLIEEQKTAKIVFKKQQK
DLKQKKDKKSSK*m

Frame B:
sahi*kkwfkdlpteedyltvllltlpkssrlqvvd*ytntsvklvkfqdvvnvvst*pv
sqp*dhtntkifqnqeelfhvlmvvanvpnvsvtesfvls*lknkkplklssrsnkki*n
krkirnhpnkcsd*yqsfftykkk---

---sahi*kkwfkdlpteedyltvllltlpkssrlqvvd*ytntsvklvkfqdvvnvvst
*pvsqp*dhtntkifqnqeelfhvlmvvanvpnvsvtesfvls*lknkkplklssrsnkk
i*nkrkirnhpnkc

Frame C:
lhtyrkngsktylqkkiilpyyf*ryqnrqdsrw*isipihr*nw*sskmw*mwcqlsry
pslktipiqksskikkncftclww*qmcqmcp*qnrscfln*rtknr*nclqeatkrfkt
ker*EIIQINVVININHFLLIKKK---

---lhtyrkngsktylqkkiilpyyf*ryqnrqdsrw*isipihr*nw*sskmw*mwcql
srypslktipiqksskikkncftclww*qmcqmcp*qnrscfln*rtknr*nclqeatkr
fktker*eiiqin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE559 (VSE559Q) /CSM/VS/VSE5-C/VSE559Q.Seq.d/                        841   0.0
VSA836 (VSA836Q) /CSM/VS/VSA8-B/VSA836Q.Seq.d/                        841   0.0
VHM172 (VHM172Q) /CSM/VH/VHM1-C/VHM172Q.Seq.d/                        841   0.0
VHK836 (VHK836Q) /CSM/VH/VHK8-B/VHK836Q.Seq.d/                        841   0.0
VHK660 (VHK660Q) /CSM/VH/VHK6-C/VHK660Q.Seq.d/                        841   0.0
VFN867 (VFN867Q) /CSM/VF/VFN8-C/VFN867Q.Seq.d/                        841   0.0
VFD321 (VFD321Q) /CSM/VF/VFD3-A/VFD321Q.Seq.d/                        841   0.0
SFL482 (SFL482Q) /CSM/SF/SFL4-D/SFL482Q.Seq.d/                        841   0.0
VFJ523 (VFJ523Q) /CSM/VF/VFJ5-A/VFJ523Q.Seq.d/                        835   0.0
VSI337 (VSI337Q) /CSM/VS/VSI3-B/VSI337Q.Seq.d/                        833   0.0
own update 2004. 8.23
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CA859767|CA859767.1 EST634261 GVSP Glomus versiforme cDNA clone pGVSP10-70, mRNAsequence.    48   1e-05  2
CA859342|CA859342.1 EST633836 GVSP Glomus versiforme cDNA clone pGVSP4-90, mRNA sequence.    48   1e-05  2
CA859505|CA859505.1 EST633999 GVSP Glomus versiforme cDNA clone pGVSP7-22, mRNA sequence.    48   1e-05  2
CA859340|CA859340.1 EST633834 GVSP Glomus versiforme cDNA clone pGVSP4-85, mRNA sequence.    48   1e-05  2
BE581594|BE581594.1 kq47h04.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:R34A_YEAST P87262 60S RIBOSOMAL PROTEIN L34-A. ;, mRNA sequence.    38   2e-04  2
BG225979|BG225979.1 kp44c11.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:R34A_YEAST P87262 60S RIBOSOMAL PROTEIN L34-A. ;contains Alu repetitive element;, mRNA sequence.    38   2e-04  2
BE224572|BE224572.1 kp57a11.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:R34A_YEAST P87262 60S RIBOSOMAL PROTEIN L34-A. ;, mRNA sequence.    38   2e-04  2
AW588153|AW588153.1 kp20a07.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:RL34_SCHPO O42846 60S RIBOSOMAL PROTEIN L34. ;, mRNA sequence.    38   2e-04  2
AJ517522|AJ517522.1 Dreissena polymorpha EST, clone 1mof14.        56   8e-04  1
CA939378|CA939378.1 ru13d06.y1 Heterodera glycines J4 Heterodera glycines cDNA 5' similar to TR:Q9VHE5 Q9VHE5 CG9354 PROTEIN. ;, mRNA sequence.    42   0.011  2
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY857448_1(AY857448|pid:none) Suberites domuncula L34 mRNA, comp...   119   9e-26
CU633900_1002(CU633900|pid:none) Podospora anserina genomic DNA ...   116   1e-24
AP007159_572(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...   116   1e-24
AM920433_411(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   115   2e-24
AM270139_3(AM270139|pid:none) Aspergillus niger contig An07c0220...   115   2e-24
AF378548_1(AF378548|pid:none) Ophiostoma novo-ulmi clone 10 ribo...   114   4e-24
EU810310_1(EU810310|pid:none) Gymnochlora stellata 60S ribosomal...   110   6e-23
CR382136_623(CR382136|pid:none) Debaryomyces hansenii strain CBS...   109   1e-22
CR382129_184(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   109   1e-22
CR380959_541(CR380959|pid:none) Candida glabrata strain CBS138 c...   108   2e-22
protein update 2009. 5.28
PSORT 

 psg: 0.75  gvh: 0.25  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.19
 nuc: 0.24  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for SFL482 is cyt
5' end seq. ID SFL482F
5' end seq. 
>SFL482F.Seq
ATCTGCACACATATAGAAAAAATGGTTCAAAGACTTACCTACAGAAGAAGATTATCTTAC
CGTACTACTTCTAACGCTACCAAAATCGTCAAGACTCCAGGTGGTAGATTAGTATACCAA
TACATCGGTAAAACTGGTAAAGTTCCAAGATGTGGTGAATGTGGTGTCAACTTAGCCGGT
ATCCCAGCCTTAAGACCATACCAATACAAAAATCTTCCAAAATCAAGAAGAACTGTTTCA
CGTGCTTATGGTGGTAGCAAATGTGCCAAATGTGTCCGTAACAGAATCGTTCGTGCTTTC
TTAATTGAAGAACAAAAAACCGCTAAAATTGTCTTCAAGAAGCAACAAAAAGATTTAAAA
CAAAAGAAAGATAAGAAATCATCCAAATAAATGTAGTGATTAATATCAATCATTTTTTAC
TTATAAAAAAAAAA----------
Length of 5' end seq. 434
3' end seq. ID SFL482Z
3' end seq. 
>SFL482Z.Seq
----------ATCTGCACACATATAGAAAAAATGGTTCAAAGACTTACCTACAGAAGAAG
ATTATCTTACCGTACTACTTCTAACGCTACCAAAATCGTCAAGACTCCAGGTGGTAGATT
AGTATACCAATACATCGGTAAAACTGGTAAAGTTCCAAGATGTGGTGAATGTGGTGTCAA
CTTAGCCGGTATCCCAGCCTTAAGACCATACCAATACAAAAATCTTCCAAAATCAAGAAG
AACTGTTTCACGTGCTTATGGTGGTAGCAAATGTGCCAAATGTGTCCGTAACAGAATCGT
TCGTGCTTTCTTAATTGAAGAACAAAAAACCGCTAAAATTGTCTTCAAGAAGCAACAAAA
AGATTTAAAACAAAAGAAAGATAAGAAATCATCCAAATAAATGT
Length of 3' end seq. 394
Connected seq. ID SFL482P
Connected seq. 
>SFL482P.Seq
ATCTGCACACATATAGAAAAAATGGTTCAAAGACTTACCTACAGAAGAAGATTATCTTAC
CGTACTACTTCTAACGCTACCAAAATCGTCAAGACTCCAGGTGGTAGATTAGTATACCAA
TACATCGGTAAAACTGGTAAAGTTCCAAGATGTGGTGAATGTGGTGTCAACTTAGCCGGT
ATCCCAGCCTTAAGACCATACCAATACAAAAATCTTCCAAAATCAAGAAGAACTGTTTCA
CGTGCTTATGGTGGTAGCAAATGTGCCAAATGTGTCCGTAACAGAATCGTTCGTGCTTTC
TTAATTGAAGAACAAAAAACCGCTAAAATTGTCTTCAAGAAGCAACAAAAAGATTTAAAA
CAAAAGAAAGATAAGAAATCATCCAAATAAATGTAGTGATTAATATCAATCATTTTTTAC
TTATAAAAAAAAAA----------ATCTGCACACATATAGAAAAAATGGTTCAAAGACTT
ACCTACAGAAGAAGATTATCTTACCGTACTACTTCTAACGCTACCAAAATCGTCAAGACT
CCAGGTGGTAGATTAGTATACCAATACATCGGTAAAACTGGTAAAGTTCCAAGATGTGGT
GAATGTGGTGTCAACTTAGCCGGTATCCCAGCCTTAAGACCATACCAATACAAAAATCTT
CCAAAATCAAGAAGAACTGTTTCACGTGCTTATGGTGGTAGCAAATGTGCCAAATGTGTC
CGTAACAGAATCGTTCGTGCTTTCTTAATTGAAGAACAAAAAACCGCTAAAATTGTCTTC
AAGAAGCAACAAAAAGATTTAAAACAAAAGAAAGATAAGAAATCATCCAAATAAATGT
Length of connected seq. 828
Full length Seq ID -
Full length Seq. -
Length of full length seq. -