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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL479
Library SF
(Link to library)
Clone ID SFL479
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFL479P
(Link to Original site)
Representative DNA sequence 
>SFL479 (SFL479Q) /CSM/SF/SFL4-D/SFL479Q.Seq.d/
ACCAATATATATTTATATTTATATATTTATATATTTTTTTTTATTTTATTTTNACACCCT
ATTCTATATAAATTAATTTTTTTTTTTTTTANCNCCAAATTAAAAAAAAAAXXXXXXXXX
XTCATGATACCATCATGAGAATGAAACTCTATGCTGACTCTTTAGCTCGTTACAGTAAAT
CACCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTAT
CTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATG
AAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTG
TTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAA
TTTGTATTTTGAATGGTCCAATTTCATCTGCTGATAAGAAATTTGAATCACTCCAAATCA
TTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCG
CTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCA
ATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAAT
TTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCA
TCTCAAAATCATATGATGCTACCTCTCACTTTGAGACCACTTGTGAAGATGTCATGGATA
TGTACAAGAGAATCACGGTAAAGATTTAGTTCTCACTGTTCATCCAAAATTCTTAACAAC
AAGAAGAAGCNGAACCAAGAACAAGAAGAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
TNIYLYLYIYIFFFILFXHPILYKLIFFFFXXKLKKK---

---HDTIMRMKLYADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIV
FDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPISSADKKFESL
QIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQ
EKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDVMDMYKRITVKI*fslfiqns
*qqeeaeprtrr
Translated Amino Acid sequence (All Frames) 
Frame A:
TNIYLYLYIYIFFFILFXHPILYKLIFFFFXXKLKKK---

---s*yhhenetlc*lfsslq*itihlsiiwfr*ittsicpficylwwyiya**tn*kyc
fr*rkeny*syi*r*ncnm**ncl*siifpk*ssker*nysfnlyfewsnfic**ei*it
pnhyptkts*tsiryvrwcyvirslclskg*ihchrfshc*nq*treristslrfirsns
reiclyf*fh*tnc*wycrqcfhlkii*cylsl*dhl*rchgyvqenhgkdlvltvhpkf
lttrrsxtknkk

Frame B:
piyiyiyifiyfflfyfxtlfyin*fffflxpn*kk---

---HDTIMRMKLYADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIV
FDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPISSADKKFESL
QIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQ
EKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDVMDMYKRITVKI*fslfiqns
*qqeeaeprtrr

Frame C:
qyififiylyiffyfixtpysi*inffffxxqikkk---

---mips*e*nsmltl*lvtvnhhtfihymv*vnyhkhlpvyllsmvvhiclinqlkilf
smkkrkllklhlkvkl*hviklfvihhisqikfkrkvklfvqfvf*mvqfhllirnlnhs
kslshknklnvnqictlvlchplivsvqrvntlpsfqpllkpmnqrkn*hqltly*vqfk
rnlsiflislnqllmvlptmfssqnhmmlpltlrplvkmswictresr*rfsshcsskil
nnkkkxnqeqee
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL479 (SFL479Q) /CSM/SF/SFL4-D/SFL479Q.Seq.d/                       1479   0.0
CFH515 (CFH515Q) /CSM/CF/CFH5-A/CFH515Q.Seq.d/                       1441   0.0
AFB514 (AFB514Q) /CSM/AF/AFB5-A/AFB514Q.Seq.d/                       1441   0.0
SFL120 (SFL120Q) /CSM/SF/SFL1-A/SFL120Q.Seq.d/                       1400   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1400   0.0
CFH888 (CFH888Q) /CSM/CF/CFH8-D/CFH888Q.Seq.d/                       1398   0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/                       1394   0.0
VFJ639 (VFJ639Q) /CSM/VF/VFJ6-B/VFJ639Q.Seq.d/                       1390   0.0
AFE889 (AFE889Q) /CSM/AF/AFE8-D/AFE889Q.Seq.d/                       1388   0.0
AFD453 (AFD453Q) /CSM/AF/AFD4-C/AFD453Q.Seq.d/                       1388   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi).    40   9e-10  4
AL408803|AL408803.1 T3 end of clone AV0AA010G06 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    54   2e-09  3
CA258468|CA258468.1 SCCCRT3007F10.g RT3 Saccharum officinarum cDNA clone SCCCRT3007F10 5', mRNA sequence.    60   2e-08  2
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   5e-08  2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62   5e-08  2
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   5e-08  2
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   5e-08  2
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   5e-08  2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   6e-08  2
BE382073|BE382073.1 601272233F1 NCI_CGAP_Mam1 Mus musculus cDNA clone IMAGE:3601424 5', mRNA sequence.    38   8e-07  4
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   283   5e-75
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   281   1e-74
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   281   1e-74
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   281   1e-74
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA.            281   1e-74
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   281   3e-74
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   280   3e-74
A54091(A54091;S35964;A37996)rab GDP dissociation inhibitor alpha...   280   3e-74
AB171705_1(AB171705|pid:none) Macaca fascicularis brain cDNA clo...   280   3e-74
AY665236_1(AY665236|pid:none) Saimiri boliviensis GDP dissociati...   280   3e-74
protein update 2009. 5.28
PSORT 

 psg: 1.00  gvh: 0.48  alm: 0.30  top: 0.67  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SFL479 is cyt
5' end seq. ID SFL479F
5' end seq. 
>SFL479F.Seq
ACCAATATATATTTATATTTATATATTTATATATTTTTTTTTATTTTATTTTNACACCCT
ATTCTATATAAATTAATTTTTTTTTTTTTTANCNCCAAATTAAAAAAAAAA---------
-
Length of 5' end seq. 111
3' end seq. ID SFL479Z
3' end seq. 
>SFL479Z.Seq
----------TCATGATACCATCATGAGAATGAAACTCTATGCTGACTCTTTAGCTCGTT
ACAGTAAATCACCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATTTG
CCCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTG
TTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTG
ATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTA
TTCGTTCAATTTGTATTTTGAATGGTCCAATTTCATCTGCTGATAAGAAATTTGAATCAC
TCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTA
TGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCACTG
TTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTC
AAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACA
ATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAGACCACTTGTGAAGATG
TCATGGATATGTACAAGAGAATCACGGTAAAGATTTAGTTCTCACTGTTCATCCAAAATT
CTTAACAACAAGAAGAAGCNGAACCAAGAACAAGAAGAA
Length of 3' end seq. 749
Connected seq. ID SFL479P
Connected seq. 
>SFL479P.Seq
ACCAATATATATTTATATTTATATATTTATATATTTTTTTTTATTTTATTTTNACACCCT
ATTCTATATAAATTAATTTTTTTTTTTTTTANCNCCAAATTAAAAAAAAAA---------
-TCATGATACCATCATGAGAATGAAACTCTATGCTGACTCTTTAGCTCGTTACAGTAAAT
CACCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTAT
CTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATG
AAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTG
TTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAA
TTTGTATTTTGAATGGTCCAATTTCATCTGCTGATAAGAAATTTGAATCACTCCAAATCA
TTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCG
CTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCA
ATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAAT
TTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCA
TCTCAAAATCATATGATGCTACCTCTCACTTTGAGACCACTTGTGAAGATGTCATGGATA
TGTACAAGAGAATCACGGTAAAGATTTAGTTCTCACTGTTCATCCAAAATTCTTAACAAC
AAGAAGAAGCNGAACCAAGAACAAGAAGAA
Length of connected seq. 860
Full length Seq ID -
Full length Seq. -
Length of full length seq. -