>AFA166 (AFA166Q) /CSM/AF/AFA1-C/AFA166Q.Seq.d/
XXXXXXXXXXACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGA
TAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCNCCATCAAGCAGTGC
TGCTTCAAGT

---LQVQQLVELQLVVQLLIVVLLPQPIVALPPHXHQAVLLQ

Frame A:
---LQVQQLVELQLVVQLLIVVLLPQPIVALPPHXHQAVLLQ


Frame B:
---crynnwwnynwwfnf***ccflsr**rcllixikqccfk


Frame C:
---agtttggtttggstsdssaassadssaassspsssaass

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                        232   1e-60
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/                        232   1e-60
VFB558 (VFB558Q) /CSM/VF/VFB5-C/VFB558Q.Seq.d/                        232   1e-60
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/                        232   1e-60
VFA779 (VFA779Q) /CSM/VF/VFA7-D/VFA779Q.Seq.d/                        232   1e-60
SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/                        232   1e-60
SSI632 (SSI632Q) /CSM/SS/SSI6-B/SSI632Q.Seq.d/                        232   1e-60
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        232   1e-60
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                        232   1e-60
SSB232 (SSB232Q) /CSM/SS/SSB2-B/SSB232Q.Seq.d/                        232   1e-60

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.   232  7e-58  1
AE003805|AE003805.3 Drosophila melanogaster chromosome 2R, section 45 of 74 of the complete sequence.    42  1.4  1
AC020024|AC020024.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42  1.4  1
AC099030|AC099030.1 Drosophila melanogaster, chromosome 2R, region 53F-54X, BAC clone BACR09M08, complete sequence.    42  1.4  1
D34686|D34686.1 C.elegans cDNA clone yk11a11 : 5' end, single read.    42  1.4  1
U23176|U23176.2 Caenorhabditis elegans cosmid F21H12, complete sequence.    42  1.4  1
AC004641|AC004641.1 Drosophila melanogaster DNA sequence (P1s DS07321 (D175), DS05993 (D241), and DS06306 (D173)), complete sequence.    42  1.4  1
CD658158|CD658158.1 EtESTef18b08.y1 Eimeria tenella M5-6 Excised cDNA Eimeria tenella cDNA 5' similar to TR:O89068 O89068 RIBOSOMAL PROTEIN S3 ;, mRNA sequence.    32  2.8  2
U21211|U21211.1 Chironomus dorsalis histone H1-I gene, complete cds.    40  5.7  1
BZ436366|BZ436366.1 BONEC54TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONEC54, DNA sequence.    40  5.7  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 18,716,171

 psg: 0.75  gvh: 0.80  alm: 0.23  top: 0.60  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.52  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFA166 is nuc

>AFA166Z.Seq
----------ACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGA
TAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCNCCATCAAGCAGTGC
TGCTTCAAGT