AFI675
Library AF
(Link to library)
Clone ID AFI675
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFI675Z
(Link to Original site)
Representative DNA sequence
>AFI675 (AFI675Q) /CSM/AF/AFI6-D/AFI675Q.Seq.d/
XXXXXXXXXXATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAA
GTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAA
AAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAA
GTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTT
GCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAA
TTCTGCGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGT
GAACACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGAT
GTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGAC
AAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTC
ATTCAAGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTT
GAATCTAAAAAAGATTCTTCTGCTAAACATGATAATTATAAATAAATTTAATAAATATAT
AATAANATTTTAA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---MKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGGKV
SPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFCAPWCGHCKNLAPIYDKLGE
HLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFI
QDNAAIEFKLPSSQTDDNVESKKDSSAKHDNYK*i**iynxil


Translated Amino Acid sequence (All Frames)
Frame A:
---yeeipttsnsygslw*scsshlc*fscq*sslqfr*krnlliryrlqmdprchww*s
fsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*ilrsmvrslqescsnlr*ir*
tlkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qrksnll*rskk*syelc*ih
sr*rch*iqitiisn***c*i*krffc*t**l*inlini**xf


Frame B:
---MKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGGKV
SPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFCAPWCGHCKNLAPIYDKLGE
HLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFI
QDNAAIEFKLPSSQTDDNVESKKDSSAKHDNYK*i**iynxil


Frame C:
---*rnshnkqliwvslvklfqpslliqlpiklvtismkkkpshsipspngskmslvvkf
lhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlnsalhgaviarillqstin*vn
t*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtkkiqslmkvkemii*tllnsf
kitlplnsnyhhlklmimlnlkkilllnmiiinkfnkyiixf*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI675 (AFI675Q) /CSM/AF/AFI6-D/AFI675Q.Seq.d/ 1231 0.0
VFM432 (VFM432Q) /CSM/VF/VFM4-B/VFM432Q.Seq.d/ 1215 0.0
AHO764 (AHO764Q) /CSM/AH/AHO7-C/AHO764Q.Seq.d/ 1215 0.0
AFO829 (AFO829Q) /CSM/AF/AFO8-B/AFO829Q.Seq.d/ 1215 0.0
AFN839 (AFN839Q) /CSM/AF/AFN8-B/AFN839Q.Seq.d/ 1215 0.0
AFN252 (AFN252Q) /CSM/AF/AFN2-C/AFN252Q.Seq.d/ 1215 0.0
AFM402 (AFM402Q) /CSM/AF/AFM4-A/AFM402Q.Seq.d/ 1215 0.0
AFL789 (AFL789Q) /CSM/AF/AFL7-D/AFL789Q.Seq.d/ 1215 0.0
AFL565 (AFL565Q) /CSM/AF/AFL5-C/AFL565Q.Seq.d/ 1215 0.0
AFK581 (AFK581Q) /CSM/AF/AFK5-D/AFK581Q.Seq.d/ 1215 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 591 e-165 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 5e-08 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 66 8e-07 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 66 8e-07 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 66 8e-07 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 66 8e-07 1
CK030146|CK030146.1 AGENCOURT_16621384 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7052631 5', mRNA sequence. 62 1e-05 1
CB176061|CB176061.1 pl17e07.y3 Ancylostoma ceylanicum adult Ancylostoma ceylanicum cDNA 5' similar to TR:O17908 O17908 H06O01.1 PROTEIN. [1] ;, mRNA sequence. 62 1e-05 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 62 1e-05 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 62 1e-05 1
dna update 2004. 9.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 164 2e-39
(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 160 4e-38
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 158 1e-37
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 154 2e-36
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 153 4e-36
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 151 1e-35
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 148 1e-34
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p... 147 2e-34
BC064163_1(BC064163|pid:none) Xenopus tropicalis hypothetical pr... 146 6e-34
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 145 1e-33
protein update 2009. 4.23
PSORT

psg: 0.84 gvh: 0.38 alm: 0.43 top: 0.37 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for AFI675 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFI675Z
3' end seq.
>AFI675Z.Seq
----------ATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAA
GTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAA
AAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAA
GTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTT
GCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAA
TTCTGCGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGT
GAACACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGAT
GTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGAC
AAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTC
ATTCAAGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTT
GAATCTAAAAAAGATTCTTCTGCTAAACATGATAATTATAAATAAATTTAATAAATATAT
AATAANATTTTAA
Length of 3' end seq. 663
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -