SFL389 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFL389
Library	SF (Link to library)
Clone ID	SFL389 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U14949-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFL3-D/SFL389Q.Seq.d/
Representative seq. ID	SFL389P (Link to Original site)
Representative DNA sequence	>SFL389 (SFL389Q) /CSM/SF/SFL3-D/SFL389Q.Seq.d/ CAAAAACAATATAAAAATGATTTCATTAGAAGATCTATCACCAACATTATGGAAATNACC AGATAAAGAGGGTGAATTAAAGAAACAAGGACATGTAGTAAAGAATTGGAAGAAAAGAAA GTTTATTATTCAAAATGATATGTTATTTTATTTTAAGGATAAAGAGGAGAGACCAGTTGG AGCGGTGCCATTAAGAATGTCACGTTGCTATGAAAATAAATCATTAGGTAAACCAAATTG TTTCGAATTAGTATCACCAAGAATCAATAAAACATTTTTCATTCAAGCCAATACACCAGA TGAAATGGCAAGTTGGATGAAAGCAGTTGAGAAAGGATCAGAATATAGCACAGTATCACA ACCATTCAATCTTAAACATGAGGTACATGTTGATTTCAATTCAGCAACTGGTTTCTCTGG TTTACCAAAAGAATGGGAAGTTATCTTAAAGTCTTCAAATGTTTCAAAACAAGAAGTACT CGATAAACCAAGTGAATGGTTATCAGTTTTAGAATTTCAAGGCTGGTAGAACAATGGAAA AATCAAATTCTCAAAATTTATCTGCACTTCCTGATGAATCAAATTTAAXXXXXXXXXXTT GCAATTATGAAGACATCACATCATGATAACATTGTAAATTACATTGATAGTTATATAGTG AACGATAGAGAACTTTGGGTTGCAATGGAGTTTATGGGTGGTGGTTGTTTAACAGACATT TTAGAGGCATTTGATAATATCAAAATGAGTGAGATTCAAATTGCTTATGTGGTTAAAGAG ACCTTGAAGGCATTGCAATACATTCATAGTCTTCATCGTATTCATAGAGATATAAAGAGT GATAATATTTTATTGGGCTCAGAGGGTAGTGTAAAGATTGCTGATTTTGGTTATGCCGCT CAATTAACTCAAAAACAACAAAAACGTAATACCGTCGTTGGTACCCCTTATTGGATGGCC CCAGTACTCATTAGGGGTCACGATTATGGTGTCAAGGTTGATATTTGGTCTTTGGGTATC ATGATGATGGAAATGGCTGAAGGTGAACCACCTTATATGGATTTCCCACCATTGCGTGCT CTTTTCCTCATCACTACTAAAGGTATTCCACCACTTAAAGAAACAACCAAATGGAGTAAA ACTTTCCAAGATTTCTTCTCAAAATGTCTCGATATCAATGTTGCTAATCGTCCTGATGCT ACCGATCTTTTAAAACATCCTTTCATGGATTTGGCATGGATTCCTCNAATTTAACCATNA TTCAAGCCGCAAGAAA
sequence update	2001. 6. 1
Translated Amino Acid sequence	ktikfhkiyhqhygnxqikrvnrnkdm*rigrkesllfkmicyfilrikrrdqle rchechvamkinhvnqivsnyhqesikhfsfkpihqmkwqvgkqlrkdqniaqyhn hsilnmrymlisiqqlvslvyqkngklsslqmfqnkkysinqvngyqfNFKAGRTMEK SNSQNLSALPDESNL--- ---AIMKTSHHDNIVNYIDSYIVNDRELWVAMEFMGGGCLTDILEAFDNIKMSEIQIAYV VKETLKALQYIHSLHRIHRDIKSDNILLGSEGSVKIADFGYAAQLTQKQQKRNTVVGTPY WMAPVLIRGHDYGVKVDIWSLGIMMMEMAEGEPPYMDFPPLRALFLITTKGIPPLKETTK WSKTFQDFFSKCLDINVANRPDATDLLKHPFMDLAWIPXIpxfkpqe
Translated Amino Acid sequence (All Frames)	Frame A: qkqykndfirrsitnimextrrgiketrtcskeleekkvyyskyvilfgrgetsw sgaiknvtllkiirtklfrisitknqnifhssqytrngkldesseririhsit tiqstgtcfqfsnwflwftkrmgsylkvfkcfktrstrtkmvisfrisrlveqwk nqilkiylhflmnqi--- ---lqlrhhimitlitlivi*tienfglqwslwvvvvqtfrhliiskvrfkllm wlkrprhcntfivfivfieirviifywaqrvvrllilvmplnlknnknvipslvpl igwpqyslgvtimvsrlifglwvs*wkwlkvnhliwishhcvlfsssllkvfhhlkkqp ngvklskissqnvsismllivlmlpifnilswiwhgflxfnhxssrkk Frame B: knnikmisledlsptlwkxpdkegelkkqghvvknwkkrkfiiqndmlfyfkdkeerpvg avplrmsrcyenkslgkpncfelvsprinktffiqantpdemaswmkavekgseystvsq pfnlkhevhvdfnsatgfsglpkewevilkssnvskqevldkpsewlsvlefqgwnngk ikfskfictsikf--- ---cnyeditshcklhlyserrtlgcngvygwwlfnrhfrgi*yqnedsnclc grdlegiaihssssysrykeyfiglrgckdcfwlcrsinskttktyrrwypl ldgpsthgsrlwcqgylvfgyhddgngrttlygfptiacsfphhyrysttrnnq menfprfllkmsryqccsscyrsfktsfhgfgmdssnltxiqaar Frame C: ktikfhkiyhqhygnxqikrvnrnkdmrigrkesllfkmicyfilrikrrdqle rchechvamkinhvnqivsnyhqesikhfsfkpihqmkwqvgkqlrkdqniaqyhn hsilnmrymlisiqqlvslvyqkngklsslqmfqnkkysinqvngyqfNFKAGRTMEK SNSQNLSALPDESNL--- ---AIMKTSHHDNIVNYIDSYIVNDRELWVAMEFMGGGCLTDILEAFDNIKMSEIQIAYV VKETLKALQYIHSLHRIHRDIKSDNILLGSEGSVKIADFGYAAQLTQKQQKRNTVVGTPY WMAPVLIRGHDYGVKVDIWSLGIMMMEMAEGEPPYMDFPPLRALFLITTKGIPPLKETTK WSKTFQDFFSKCLDINVANRPDATDLLKHPFMDLAWIPXIpxfkpqe
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFL389 (SFL389Q) /CSM/SF/SFL3-D/SFL389Q.Seq.d/ 2452 0.0 CFH857 (CFH857Q) /CSM/CF/CFH8-C/CFH857Q.Seq.d/ 1294 0.0 CFA281 (CFA281Q) /CSM/CF/CFA2-D/CFA281Q.Seq.d/ 1294 0.0 SFC672 (SFC672Q) /CSM/SF/SFC6-C/SFC672Q.Seq.d/ 1292 0.0 AFK585 (AFK585Q) /CSM/AF/AFK5-D/AFK585Q.Seq.d/ 1289 0.0 SFH221 (SFH221Q) /CSM/SF/SFH2-A/SFH221Q.Seq.d/ 1287 0.0 AFB708 (AFB708Q) /CSM/AF/AFB7-A/AFB708Q.Seq.d/ 1279 0.0 VFF415 (VFF415Q) /CSM/VF/VFF4-A/VFF415Q.Seq.d/ 1267 0.0 SFD370 (SFD370Q) /CSM/SF/SFD3-C/SFD370Q.Seq.d/ 1263 0.0 VFE896 (VFE896Q) /CSM/VF/VFE8-D/VFE896Q.Seq.d/ 1261 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF277804\|AF277804.2 Dictyostelium discoideum PakB mRNA, complete cds. 844 0.0 5 U67716\|U67716.1 Dictyostelium discoideum myosin I heavy chain kinase (mihck) mRNA, complete cds. 94 5e-47 6 Y10158\|Y10158.1 D.discoideum mRNA for STE20/pak kinase homologue. 94 6e-47 6 AC115606\|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence. 94 2e-42 10 U51923\|U51923.3 Dictyostelium discoideum STE20-telated kinase DPAK1 (dpak1) mRNA, complete cds. 58 2e-23 5 AF131221\|AF131221.1 Dictyostelium discoideum p21-activated protein kinase PakA (pakA) mRNA, complete cds. 58 2e-23 5 AZ677365\|AZ677365.1 ENTFX50TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 1e-09 5 AZ684578\|AZ684578.1 ENTJV90TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 2e-09 5 BH161927\|BH161927.1 ENTQY64TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 1e-05 4 AZ676464\|AZ676464.1 ENTKP26TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 1e-05 4
dna update	2004. 2. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF277804_1(AF277804\|pid:none) Dictyostelium discoideum PakC mRNA... 433 e-120 (Q55GV3) RecName: Full=Serine/threonine-protein kinase pakC; ... 433 e-120 Y10158_1(Y10158\|pid:none) D.discoideum mRNA for STE20/pak kinase... 318 3e-85 (Q869N2) RecName: Full=Serine/threonine-protein kinase pakB; ... 318 3e-85 U67716_1(U67716\|pid:none) Dictyostelium discoideum myosin I heav... 318 3e-85 AY870660_1(AY870660\|pid:none) Entamoeba histolytica p21-activate... 298 2e-79 AF131221_1(AF131221\|pid:none) Dictyostelium discoideum p21-activ... 293 7e-78 AE014297_446(AE014297\|pid:none) Drosophila melanogaster chromoso... 243 8e-63 U56080_1(U56080\|pid:none) Drosophila melanogaster p21-activated ... 243 1e-62 BC059992_1(BC059992\|pid:none) Xenopus laevis hypothetical protei... 242 2e-62
protein update	2009. 5.28
PSORT	psg: 0.75 gvh: 0.41 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 28.0 %: nuclear 8.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: vesicles of secretory system >> prediction for SFL389 is cyt
5' end seq. ID	SFL389F
5' end seq.	>SFL389F.Seq CAAAAACAATATAAAAATGATTTCATTAGAAGATCTATCACCAACATTATGGAAATNACC AGATAAAGAGGGTGAATTAAAGAAACAAGGACATGTAGTAAAGAATTGGAAGAAAAGAAA GTTTATTATTCAAAATGATATGTTATTTTATTTTAAGGATAAAGAGGAGAGACCAGTTGG AGCGGTGCCATTAAGAATGTCACGTTGCTATGAAAATAAATCATTAGGTAAACCAAATTG TTTCGAATTAGTATCACCAAGAATCAATAAAACATTTTTCATTCAAGCCAATACACCAGA TGAAATGGCAAGTTGGATGAAAGCAGTTGAGAAAGGATCAGAATATAGCACAGTATCACA ACCATTCAATCTTAAACATGAGGTACATGTTGATTTCAATTCAGCAACTGGTTTCTCTGG TTTACCAAAAGAATGGGAAGTTATCTTAAAGTCTTCAAATGTTTCAAAACAAGAAGTACT CGATAAACCAAGTGAATGGTTATCAGTTTTAGAATTTCAAGGCTGGTAGAACAATGGAAA AATCAAATTCTCAAAATTTATCTGCACTTCCTGATGAATCAAATTTAA----------
Length of 5' end seq.	588
3' end seq. ID	SFL389Z
3' end seq.	>SFL389Z.Seq ----------TTGCAATTATGAAGACATCACATCATGATAACATTGTAAATTACATTGAT AGTTATATAGTGAACGATAGAGAACTTTGGGTTGCAATGGAGTTTATGGGTGGTGGTTGT TTAACAGACATTTTAGAGGCATTTGATAATATCAAAATGAGTGAGATTCAAATTGCTTAT GTGGTTAAAGAGACCTTGAAGGCATTGCAATACATTCATAGTCTTCATCGTATTCATAGA GATATAAAGAGTGATAATATTTTATTGGGCTCAGAGGGTAGTGTAAAGATTGCTGATTTT GGTTATGCCGCTCAATTAACTCAAAAACAACAAAAACGTAATACCGTCGTTGGTACCCCT TATTGGATGGCCCCAGTACTCATTAGGGGTCACGATTATGGTGTCAAGGTTGATATTTGG TCTTTGGGTATCATGATGATGGAAATGGCTGAAGGTGAACCACCTTATATGGATTTCCCA CCATTGCGTGCTCTTTTCCTCATCACTACTAAAGGTATTCCACCACTTAAAGAAACAACC AAATGGAGTAAAACTTTCCAAGATTTCTTCTCAAAATGTCTCGATATCAATGTTGCTAAT CGTCCTGATGCTACCGATCTTTTAAAACATCCTTTCATGGATTTGGCATGGATTCCTCNA ATTTAACCATNATTCAAGCCGCAAGAAA
Length of 3' end seq.	678
Connected seq. ID	SFL389P
Connected seq.	>SFL389P.Seq CAAAAACAATATAAAAATGATTTCATTAGAAGATCTATCACCAACATTATGGAAATNACC AGATAAAGAGGGTGAATTAAAGAAACAAGGACATGTAGTAAAGAATTGGAAGAAAAGAAA GTTTATTATTCAAAATGATATGTTATTTTATTTTAAGGATAAAGAGGAGAGACCAGTTGG AGCGGTGCCATTAAGAATGTCACGTTGCTATGAAAATAAATCATTAGGTAAACCAAATTG TTTCGAATTAGTATCACCAAGAATCAATAAAACATTTTTCATTCAAGCCAATACACCAGA TGAAATGGCAAGTTGGATGAAAGCAGTTGAGAAAGGATCAGAATATAGCACAGTATCACA ACCATTCAATCTTAAACATGAGGTACATGTTGATTTCAATTCAGCAACTGGTTTCTCTGG TTTACCAAAAGAATGGGAAGTTATCTTAAAGTCTTCAAATGTTTCAAAACAAGAAGTACT CGATAAACCAAGTGAATGGTTATCAGTTTTAGAATTTCAAGGCTGGTAGAACAATGGAAA AATCAAATTCTCAAAATTTATCTGCACTTCCTGATGAATCAAATTTAA----------TT GCAATTATGAAGACATCACATCATGATAACATTGTAAATTACATTGATAGTTATATAGTG AACGATAGAGAACTTTGGGTTGCAATGGAGTTTATGGGTGGTGGTTGTTTAACAGACATT TTAGAGGCATTTGATAATATCAAAATGAGTGAGATTCAAATTGCTTATGTGGTTAAAGAG ACCTTGAAGGCATTGCAATACATTCATAGTCTTCATCGTATTCATAGAGATATAAAGAGT GATAATATTTTATTGGGCTCAGAGGGTAGTGTAAAGATTGCTGATTTTGGTTATGCCGCT CAATTAACTCAAAAACAACAAAAACGTAATACCGTCGTTGGTACCCCTTATTGGATGGCC CCAGTACTCATTAGGGGTCACGATTATGGTGTCAAGGTTGATATTTGGTCTTTGGGTATC ATGATGATGGAAATGGCTGAAGGTGAACCACCTTATATGGATTTCCCACCATTGCGTGCT CTTTTCCTCATCACTACTAAAGGTATTCCACCACTTAAAGAAACAACCAAATGGAGTAAA ACTTTCCAAGATTTCTTCTCAAAATGTCTCGATATCAATGTTGCTAATCGTCCTGATGCT ACCGATCTTTTAAAACATCCTTTCATGGATTTGGCATGGATTCCTCNAATTTAACCATNA TTCAAGCCGCAAGAAA
Length of connected seq.	1266
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas