AFA885
Library AF
(Link to library)
Clone ID AFA885
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14939-1
Original site URL
Representative seq. ID AFA885Z
(Link to Original site)
Representative DNA sequence
>AFA885 (AFA885Q) /CSM/AF/AFA8-D/AFA885Q.Seq.d/
XXXXXXXXXXTCTTGATTTANTTAGTGATAAATCATTTNATTCAGAAAATTGATAATAAA
GAATCAGGTAATNCANAATTTGTTGAAAGATTAGTATCATGCNCATTCCAAGAAAGAGGT
ATTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---LIXLVINHXIQKIDNKESGNXXFVERLVSCXFQERGI


Translated Amino Acid sequence (All Frames)
Frame A:
---ldlxsdksfxsen***rir*xxic*kisimxiprkry


Frame B:
---LIXLVINHXIQKIDNKESGNXXFVERLVSCXFQERGI


Frame C:
---*fx***iixfrkliiknqvxxnllkd*yhahskkevf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFA885 (AFA885Q) /CSM/AF/AFA8-D/AFA885Q.Seq.d/ 196 5e-50
VFK344 (VFK344Q) /CSM/VF/VFK3-B/VFK344Q.Seq.d/ 165 2e-40
VFI503 (VFI503Q) /CSM/VF/VFI5-A/VFI503Q.Seq.d/ 165 2e-40
SFB271 (SFB271Q) /CSM/SF/SFB2-C/SFB271Q.Seq.d/ 165 2e-40
AFH549 (AFH549Q) /CSM/AF/AFH5-C/AFH549Q.Seq.d/ 165 2e-40
AFE585 (AFE585Q) /CSM/AF/AFE5-D/AFE585Q.Seq.d/ 165 2e-40
AFD862 (AFD862Q) /CSM/AF/AFD8-C/AFD862Q.Seq.d/ 165 2e-40
VSB591 (VSB591Q) /CSM/VS/VSB5-D/VSB591Q.Seq.d/ 123 6e-28
FC-AI08 (FC-AI08Q) /CSM/FC/FC-AI/FC-AI08Q.Seq.d/ 88 3e-17
SFC647 (SFC647Q) /CSM/SF/SFC6-B/SFC647Q.Seq.d/ 34 0.43

own update 2003.12. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX571723|BX571723.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 34 1.4 4
AC131257|AC131257.3 Homo sapiens chromosome 15 clone RP13-423F3 map 15, LOW-PASS SEQUENCE SAMPLING. 40 5.4 1
BG227509|BG227509.1 kq07h11.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:ZK637.3 CE00434 HYPOTHETICAL 67.6 KD PROTEIN ZK637.3 IN CHROMOSOME III ;, mRNA sequence. 40 5.4 1
BQ849527|BQ849527.1 QGB10C06.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB10C06, mRNA sequence. 40 5.4 1
BG227500|BG227500.1 kq07g11.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:ZK637.3 CE00434 HYPOTHETICAL 67.6 KD PROTEIN ZK637.3 IN CHROMOSOME III ;, mRNA sequence. 40 5.4 1
AC024234|AC024234.5 Homo sapiens chromosome 11 clone RP11-313I2, WORKING DRAFT SEQUENCE, 27 unordered pieces. 40 5.4 1
BQ846375|BQ846375.1 QGA19D24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGA19D24, mRNA sequence. 40 5.4 1
AC012198|AC012198.3 Homo sapiens chromosome 15 clone RP11-345O16 map 15, WORKING DRAFT SEQUENCE, 18 unordered pieces. 40 5.4 1
BQ994845|BQ994845.1 QGF8F11.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGF8F11, mRNA sequence. 40 5.4 1
AP003400|AP003400.2 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-643G5. 40 5.4 1
dna update 2003. 7.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54E62) RecName: Full=Dolichyl-diphosphooligosaccharide--protei... 45 3e-04

protein update 2009. 3.26
PSORT

psg: 0.82 gvh: 0.48 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for AFA885 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFA885Z
3' end seq.
>AFA885Z.Seq
----------TCTTGATTTANTTAGTGATAAATCATTTNATTCAGAAAATTGATAATAAA
GAATCAGGTAATNCANAATTTGTTGAAAGATTAGTATCATGCNCATTCCAAGAAAGAGGT
ATTC
Length of 3' end seq. 114
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -