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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL341
Library SF
(Link to library)
Clone ID SFL341
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFL341P
(Link to Original site)
Representative DNA sequence 
>SFL341 (SFL341Q) /CSM/SF/SFL3-B/SFL341Q.Seq.d/
AGTTGAATTNAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCATGGTACTCT
TAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTA
CCGTTCCAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTT
CAAAATTAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTT
TAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTGGTACAT
TTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTG
ATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAAT
TTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCCGTCGTTTAAGA
ACTGCTTGTGAACGTGCCAAAAGAACTCTTTCATCATCTGCTCAXXXXXXXXXXACCAGG
TGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGG
TAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTAC
ATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAA
CAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAA
AATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGA
ATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAA
AGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGT
ACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAA
AGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCC
ACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAA
AGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTC
TTAAAAATATAAGTAGTAAATCAATAAGCTTCTCAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
s*ixgetkvfspeeisswys*k*kkplklilvkpliml*lpfqlismivnvkqpkmlvqf
qn*mfnvllmnqllllllmv*krkvlvkrif*fsi*vvvhlmflslplkmvylklkpplv
ili*VVKILIIVSFLTLLMNLNVNIKKILWVINVLFRRLRTACERAKRTLSSSA---

---PGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAED
KSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNS
IKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQ
EGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kyk**inkll
Translated Amino Acid sequence (All Frames) 
Frame A:
s*ixgetkvfspeeisswys*k*kkplklilvkpliml*lpfqlismivnvkqpkmlvqf
qn*mfnvllmnqllllllmv*krkvlvkrif*fsi*vvvhlmflslplkmvylklkpplv
ili*VVKILIIVSFLTLLMNLNVNIKKILWVINVLFRRLRTACERAKRTLSSSA---

---trcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis*r
*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*kf
n*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*tls
rrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflki*vvnq*ash

Frame B:
vexkvklkfshqkkslhgtlknernr*slsw*nh**ccnyrsslfq**stssnqrcwynf
kikcstyy**tncccyclwfrkerfw*keyfnfrfrwwyi*cfspyh*rwci*s*shrw*
ysfrw*rf**ssrfslc**i*t*t*kryyg*stccsvv*ellvnvpkelfhhll---

---PGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAED
KSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNS
IKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQ
EGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kyk**inkll

Frame C:
lnxr*n*sfltrrnlfmvllkmketaeaylgktinnavitvpayfndsqrqatkdagtis
klnvqriineptaaaiayglekkgsgeknilifdlgggtfdvslltiedgvfevkatagd
thlggedfdnrlvshfvdefkrkhkkdimgnqravpsfkncl*tcqknsfiics---

---qvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myqlki
nqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsllkiq
lkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vnsik
kevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflknissksisfs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL341 (SFL341Q) /CSM/SF/SFL3-B/SFL341Q.Seq.d/                       2385   0.0
AFL123 (AFL123Q) /CSM/AF/AFL1-A/AFL123Q.Seq.d/                       1388   0.0
CHO754 (CHO754Q) /CSM/CH/CHO7-C/CHO754Q.Seq.d/                       1384   0.0
CHN776 (CHN776Q) /CSM/CH/CHN7-D/CHN776Q.Seq.d/                       1384   0.0
VHM408 (VHM408Q) /CSM/VH/VHM4-A/VHM408Q.Seq.d/                       1378   0.0
CFG318 (CFG318Q) /CSM/CF/CFG3-A/CFG318Q.Seq.d/                       1376   0.0
AFJ316 (AFJ316Q) /CSM/AF/AFJ3-A/AFJ316Q.Seq.d/                       1374   0.0
SHE853 (SHE853Q) /CSM/SH/SHE8-C/SHE853Q.Seq.d/                       1368   0.0
AFK130 (AFK130Q) /CSM/AF/AFK1-B/AFK130Q.Seq.d/                       1366   0.0
AFJ326 (AFJ326Q) /CSM/AF/AFJ3-B/AFJ326Q.Seq.d/                       1366   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1334   0.0    3
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1326   0.0    3
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   190   e-149  9
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   198   e-142  13
A58313|A58313.1 Sequence 1 from Patent WO9636707.                 125   e-118  10
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          125   e-117  10
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70.   125   e-117  10
AF278536|AF278536.1 Parastrongyloides trichosuri heat shock 70 protein gene, complete cds.   137   e-105  8
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.   100   e-102  8
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.   100   e-102  8
dna update 2004. 2. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   345   1e-93
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   345   1e-93
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           248   6e-70
AY582833_1(AY582833|pid:none) Chytriomyces confervae strain CBS ...   246   7e-70
EU679414_1(EU679414|pid:none) Tetranychus cinnabarinus heat shoc...   247   3e-69
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   261   5e-69
EU679412_1(EU679412|pid:none) Tetranychus cinnabarinus heat shoc...   245   6e-69
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   258   2e-68
CR382131_1467(CR382131|pid:none) Yarrowia lipolytica chromosome ...   239   2e-68
CR382131_1460(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   239   2e-68
protein update 2009. 5.28
PSORT 

 psg: 0.98  gvh: 0.52  alm: 0.23  top: 0.73  tms: 0.07  mit: 0.43  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFL341 is nuc
5' end seq. ID SFL341F
5' end seq. 
>SFL341F.Seq
AGTTGAATTNAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCATGGTACTCT
TAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTA
CCGTTCCAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTT
CAAAATTAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTT
TAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTGGTACAT
TTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTG
ATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAAT
TTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCCGTCGTTTAAGA
ACTGCTTGTGAACGTGCCAAAAGAACTCTTTCATCATCTGCTCA----------
Length of 5' end seq. 524
3' end seq. ID SFL341Z
3' end seq. 
>SFL341Z.Seq
----------ACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAG
ATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTAC
CACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAG
ATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAA
AAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAAC
AAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATT
CAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAAT
CTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAAT
ATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATC
AAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAA
AGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCT
CTATCAAATAGATTTCTTAAAAATATAAGTAGTAAATCAATAAGCTTCTCAT
Length of 3' end seq. 702
Connected seq. ID SFL341P
Connected seq. 
>SFL341P.Seq
AGTTGAATTNAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCATGGTACTCT
TAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTA
CCGTTCCAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTT
CAAAATTAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTT
TAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTGGTACAT
TTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTG
ATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAAT
TTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCCGTCGTTTAAGA
ACTGCTTGTGAACGTGCCAAAAGAACTCTTTCATCATCTGCTCA----------ACCAGG
TGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGG
TAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTAC
ATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAA
CAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAA
AATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGA
ATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAA
AGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGT
ACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAA
AGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCC
ACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAA
AGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTC
TTAAAAATATAAGTAGTAAATCAATAAGCTTCTCAT
Length of connected seq. 1226
Full length Seq ID -
Full length Seq. -
Length of full length seq. -