SFL304
Library SF
(Link to library)
Clone ID SFL304
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SFL304Z
(Link to Original site)
Representative DNA sequence
>SFL304 (SFL304Q) /CSM/SF/SFL3-A/SFL304Q.Seq.d/
XXXXXXXXXXATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGC
TATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGA
TAACTACCGTTATGTTGATGAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---WVHLVVDPMKNQVIQMLYLVSLKTIFSGVIMMNTLVITTVMLMK


Translated Amino Acid sequence (All Frames)
Frame A:
---WVHLVVDPMKNQVIQMLYLVSLKTIFSGVIMMNTLVITTVMLMK


Frame B:
---gfiwwsir*rik*skcytwsl*rryflg****il***lplc**


Frame C:
---gsfggrsdeessdpnailglfeddifwgdndeyfsdnyryvde


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 264 3e-70
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/ 264 3e-70
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/ 264 3e-70
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/ 264 3e-70
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/ 264 3e-70
SSH773 (SSH773Q) /CSM/SS/SSH7-D/SSH773Q.Seq.d/ 264 3e-70
SSH577 (SSH577Q) /CSM/SS/SSH5-D/SSH577Q.Seq.d/ 264 3e-70
SSH465 (SSH465Q) /CSM/SS/SSH4-C/SSH465Q.Seq.d/ 264 3e-70
SSH455 (SSH455Q) /CSM/SS/SSH4-C/SSH455Q.Seq.d/ 264 3e-70
SSG562 (SSG562Q) /CSM/SS/SSG5-C/SSG562Q.Seq.d/ 264 3e-70

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds. 264 3e-67 1
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 264 3e-67 1
CL193906|CL193906.1 104_417_10941253_116_32280_049 Sorghum methylation-filtered library (LibID: 104) Sorghum bicolor genomic clone 10941253, genomic survey sequence. 30 0.49 3
AC100893|AC100893.7 Mus musculus chromosome 8 clone RP23-68I8 map 8, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces. 42 1.9 1
AC016163|AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence. 42 1.9 1
AR384488|AR384488.1 Sequence 1217 from patent US 6610836. 42 1.9 1
AC016162|AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence. 42 1.9 1
BU498376|BU498376.1 PfESToab96e02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 30 6.0 2
AU086331|AU086331.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn2327. 30 6.8 2
AC025075|AC025075.2 Homo sapiens clone RP11-128P17, WORKING DRAFT SEQUENCE, 31 unordered pieces. 40 7.4 1
dna update 2004. 2. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 98 8e-20

protein update 2009. 1.14
PSORT

psg: 0.88 gvh: 0.49 alm: 0.31 top: 0.47 tms: 0.07 mit: 0.36 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.20 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SFL304 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFL304Z
3' end seq.
>SFL304Z.Seq
----------ATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGC
TATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGA
TAACTACCGTTATGTTGATGAAG
Length of 3' end seq. 133
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -