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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL277
Library SF
(Link to library)
Clone ID SFL277
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID SFL277P
(Link to Original site)
Representative DNA sequence 
>SFL277 (SFL277Q) /CSM/SF/SFL2-D/SFL277Q.Seq.d/
ATTTATATATAATATTCACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAAC
TATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGT
TAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAA
AAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATAT
TATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATT
ACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTAC
CAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTG
CCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAG
AATCAATGAGTTTAAATCCAATGGCATXXXXXXXXXXCAGAGCGTTTTGGTGTCACCAGA
AAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCA
GGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATC
GTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTA
AAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGAT
GGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTT
GAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGT
CCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGAC
GTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGT
TTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGT
GCTACTGGTGCCCGTCAAAGGCTACCATTTCAAGAGAATACATCGTCGTAAAGGTAAATA
GGTGNATCTCTATGTGTATGGACGGCTTAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lyiiftp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklk
eehskrqhqmiy*hqllnilsklpn*iqn*LEMLLWEQYYQDHHKVQPEVRVATLLAGLP
KEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMA---

---ERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIRE
KTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAV
GVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNG
SGIALGHPLGATGARQRLPFQENTSS*r*igxslcvwta*
Translated Amino Acid sequence (All Frames) 
Frame A:
iyi*ysphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*
krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnpklelphy*qvy
qrkyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwh---

---qsvlvspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkvsv
rkpplqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*llll
svsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkliqm
alvsl*vih*vllvpvkgyhfkrihrrkgk*vxlyvygrl

Frame B:
fiynihpitnkmsfnsrietisrhlstgpilesnptsgsvksgddivivapfrtaickak
rgafketapddllapvikhiikvtkldpkligdvvmgavlprssqgatrs*schiisrft
kgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksng---

---rafwchqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp*
enhrcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfccc
rcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*skw
lwyrfrssircywcpskatisreyivvkvnrxismcmdgl

Frame C:
lyiiftp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklk
eehskrqhqmiy*hqllnilsklpn*iqn*LEMLLWEQYYQDHHKVQPEVRVATLLAGLP
KEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMA---

---ERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIRE
KTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAV
GVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNG
SGIALGHPLGATGARQRLPFQENTSS*r*igxslcvwta*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL277 (SFL277Q) /CSM/SF/SFL2-D/SFL277Q.Seq.d/                       2254   0.0
SFF247 (SFF247Q) /CSM/SF/SFF2-B/SFF247Q.Seq.d/                       1243   0.0
CFB766 (CFB766Q) /CSM/CF/CFB7-C/CFB766Q.Seq.d/                       1241   0.0
CFB164 (CFB164Q) /CSM/CF/CFB1-C/CFB164Q.Seq.d/                       1233   0.0
VFA143 (VFA143Q) /CSM/VF/VFA1-B/VFA143Q.Seq.d/                       1229   0.0
SFL240 (SFL240Q) /CSM/SF/SFL2-B/SFL240Q.Seq.d/                       1229   0.0
SFF320 (SFF320Q) /CSM/SF/SFF3-A/SFF320Q.Seq.d/                       1229   0.0
AFJ691 (AFJ691Q) /CSM/AF/AFJ6-D/AFJ691Q.Seq.d/                       1227   0.0
SFF124 (SFF124Q) /CSM/SF/SFF1-A/SFF124Q.Seq.d/                       1225   0.0
CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/                       1219   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1154   0.0    10
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    38   7e-12  6
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   3e-10  4
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   6e-09  3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    38   4e-08  5
CF609274|CF609274.1 INFIO01_000052 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    56   4e-08  3
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   1e-07  2
dna update 2004. 2. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   352   e-176
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   219   7e-94
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   218   9e-94
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   216   3e-93
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C...   223   4e-92
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM...   223   4e-92
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   215   5e-92
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...   216   8e-92
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal;  ...   219   1e-91
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   218   1e-91
protein update 2009. 5.28
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFL277 is end
5' end seq. ID SFL277F
5' end seq. 
>SFL277F.Seq
ATTTATATATAATATTCACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAAC
TATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGT
TAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAA
AAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATAT
TATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATT
ACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTAC
CAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTG
CCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAG
AATCAATGAGTTTAAATCCAATGGCAT----------
Length of 5' end seq. 507
3' end seq. ID SFL277Z
3' end seq. 
>SFL277Z.Seq
----------CAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAAT
TCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCA
GTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGT
GAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACA
ACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAA
AGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCT
GTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTA
AAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCT
TCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAAT
GGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAGGCTACCA
TTTCAAGAGAATACATCGTCGTAAAGGTAAATAGGTGNATCTCTATGTGTATGGACGGCT
TAG
Length of 3' end seq. 653
Connected seq. ID SFL277P
Connected seq. 
>SFL277P.Seq
ATTTATATATAATATTCACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAAC
TATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGT
TAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAA
AAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATAT
TATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATT
ACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTAC
CAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTG
CCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAG
AATCAATGAGTTTAAATCCAATGGCAT----------CAGAGCGTTTTGGTGTCACCAGA
AAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCA
GGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATC
GTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTA
AAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGAT
GGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTT
GAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGT
CCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGAC
GTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGT
TTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGT
GCTACTGGTGCCCGTCAAAGGCTACCATTTCAAGAGAATACATCGTCGTAAAGGTAAATA
GGTGNATCTCTATGTGTATGGACGGCTTAG
Length of connected seq. 1160
Full length Seq ID -
Full length Seq. -
Length of full length seq. -