SFL253
Library SF
(Link to library)
Clone ID SFL253
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16561-1
Original site URL
Representative seq. ID SFL253Z
(Link to Original site)
Representative DNA sequence
>SFL253 (SFL253Q) /CSM/SF/SFL2-C/SFL253Q.Seq.d/
XXXXXXXXXXTTAAAANNAAANTTCCANAAAAANAAGGTNTCCCCCANATCANAANGTTT
CATTTTCGNTGGTAANCATTANAAAAATGNTGGNCCTTTCTCTGATTCCAAAATCCAAAA
AGAATCANCTCTCCACTTGTCCTCAGATTAAAAGGTGGTATGCAAATNTTTGTCAAANCA
TTAACTGGTAAGACCATCACTNTTGAAGTGAGGGCTCAGATAATATTGAAAATGTTAAAN
CAAAGGTTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTA
AACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCC
ATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGA
CTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAG
ACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGG
ATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCA
GATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCG
AAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTA
TNCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---*xxxsxkxrxppxxxvsfsxvxixkmxxlslipkskknxlstcpqikrwyanxcqxi
nw*dhhx*SEGSDNIENVKXKVQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGX
P


Translated Amino Acid sequence (All Frames)
Frame A:
---*xxxsxkxrxppxxxvsfsxvxixkmxxlslipkskknxlstcpqikrwyanxcqxi
nw*dhhx*SEGSDNIENVKXKVQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGX
P


Frame B:
---kxkxpxkxgxpxixxfhfrw*xlxkxwxfl*fqnpkrixsplvlrlkggmqxfvkxl
tgktitxevraqiilkmlxqrfktkkvshqtnkd*fslvnn*kmvvlslittfkrnplsi
*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrm
vvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkvx


Frame C:
---kxxfxkxkvspxsxxfifxgxhxknxgpfsdskiqkesxlhlssd*kvvckxlsxh*
lvrpsllk*glr*y*kc*xkgsrqrryptrptkinfrw*tirrwsysl*lqhskgihspf
spqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*tiggw
sysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrryx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL253 (SFL253Q) /CSM/SF/SFL2-C/SFL253Q.Seq.d/ 1298 0.0
CFJ702 (CFJ702Q) /CSM/CF/CFJ7-A/CFJ702Q.Seq.d/ 1164 0.0
VFK729 (VFK729Q) /CSM/VF/VFK7-B/VFK729Q.Seq.d/ 1160 0.0
CFB480 (CFB480Q) /CSM/CF/CFB4-D/CFB480Q.Seq.d/ 1160 0.0
CFF325 (CFF325Q) /CSM/CF/CFF3-B/CFF325Q.Seq.d/ 1158 0.0
CFB156 (CFB156Q) /CSM/CF/CFB1-C/CFB156Q.Seq.d/ 1158 0.0
SFI636 (SFI636Q) /CSM/SF/SFI6-B/SFI636Q.Seq.d/ 1156 0.0
SFG323 (SFG323Q) /CSM/SF/SFG3-A/SFG323Q.Seq.d/ 1156 0.0
CFE733 (CFE733Q) /CSM/CF/CFE7-B/CFE733Q.Seq.d/ 1156 0.0
CFH872 (CFH872Q) /CSM/CF/CFH8-C/CFH872Q.Seq.d/ 1154 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 997 0.0 3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 989 0.0 3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 989 0.0 3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 628 0.0 3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 605 0.0 4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 589 e-177 3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 452 e-139 5
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 452 e-135 4
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin. 165 4e-85 5
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence. 159 2e-80 4
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

D63791_1(D63791|pid:none) Homo sapiens UbC gene for polyubiquiti... 315 6e-93
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 333 2e-92
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 333 2e-92
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 333 2e-92
Z35759_1(Z35759|pid:none) T.pyriformis (CGL) polyubiquitin gene ... 313 4e-92
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 331 8e-92
AC149642_19(AC149642|pid:none) Medicago truncatula chromosome 2 ... 311 1e-91
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 331 1e-89
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 317 3e-88
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 318 9e-88
protein update 2009. 5.28
PSORT

psg: 0.75 gvh: 0.35 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for SFL253 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFL253Z
3' end seq.
>SFL253Z.Seq
----------TTAAAANNAAANTTCCANAAAAANAAGGTNTCCCCCANATCANAANGTTT
CATTTTCGNTGGTAANCATTANAAAAATGNTGGNCCTTTCTCTGATTCCAAAATCCAAAA
AGAATCANCTCTCCACTTGTCCTCAGATTAAAAGGTGGTATGCAAATNTTTGTCAAANCA
TTAACTGGTAAGACCATCACTNTTGAAGTGAGGGCTCAGATAATATTGAAAATGTTAAAN
CAAAGGTTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTA
AACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCC
ATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGA
CTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAG
ACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGG
ATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCA
GATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCG
AAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTA
TNCCA
Length of 3' end seq. 715
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -