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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL240
Library SF
(Link to library)
Clone ID SFL240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID SFL240P
(Link to Original site)
Representative DNA sequence 
>SFL240 (SFL240Q) /CSM/SF/SFL2-B/SFL240Q.Seq.d/
ATTTTTNTATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAG
AATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTC
TGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTG
TAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTAT
TAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGG
AGCAGTATTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAG
CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC
AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG
GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGXXXXXXXXXXAATGTCGCAGA
GCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGC
AGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGAC
CGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGT
TGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAA
CTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGA
AAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACC
ATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCT
CACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTA
CAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGC
TTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAGGCTACCATTTCAAGAGAATTA
CATCGTCGTAAAGGTAAATATGGTGNATCTCTATG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fxiyi*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfv
klkeehskrqhqmiy*hqllnilsklpn*iqn*LEMLLWEQYYQDHHKVQPEVRVATLLA
GLPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAW---

---NVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEG
IREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAF
AAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVN
PNGSGIALGHPLGATGARQRLPFQENYIVVKVNMVXLY
Translated Amino Acid sequence (All Frames) 
Frame A:
ifxfiynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl
*s*krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnpklelphy*
qvyqrkyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhg---

---NVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEG
IREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAF
AAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVN
PNGSGIALGHPLGATGARQRLPFQENYIVVKVNMVXLY

Frame B:
fxylyiilhpitnkmsfnsrietisrhlstgpilesnptsgsvksgddivivapfrtaic
kakrgafketapddllapvikhiikvtkldpkligdvvmgavlprssqgatrs*schiis
rftkgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngm---

---msqsvlvspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkv
svrkpplqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*ll
llsvsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkli
qmalvsl*vih*vllvpvkgyhfkritss*r*iwxism

Frame C:
fxiyi*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfv
klkeehskrqhqmiy*hqllnilsklpn*iqn*LEMLLWEQYYQDHHKVQPEVRVATLLA
GLPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAW---

---crrafwchqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrry
p*enhrcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfc
ccrcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*s
kwlwyrfrssircywcpskatisrelhrrkgkygxsl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL240 (SFL240Q) /CSM/SF/SFL2-B/SFL240Q.Seq.d/                       2258   0.0
AFJ691 (AFJ691Q) /CSM/AF/AFJ6-D/AFJ691Q.Seq.d/                       1273   0.0
VFK412 (VFK412Q) /CSM/VF/VFK4-A/VFK412Q.Seq.d/                       1259   0.0
VFB239 (VFB239Q) /CSM/VF/VFB2-B/VFB239Q.Seq.d/                       1253   0.0
VFA143 (VFA143Q) /CSM/VF/VFA1-B/VFA143Q.Seq.d/                       1251   0.0
SFL270 (SFL270Q) /CSM/SF/SFL2-C/SFL270Q.Seq.d/                       1251   0.0
CFB766 (CFB766Q) /CSM/CF/CFB7-C/CFB766Q.Seq.d/                       1251   0.0
CFA143 (CFA143Q) /CSM/CF/CFA1-B/CFA143Q.Seq.d/                       1249   0.0
VFL606 (VFL606Q) /CSM/VF/VFL6-A/VFL606Q.Seq.d/                       1247   0.0
VFJ317 (VFJ317Q) /CSM/VF/VFJ3-A/VFJ317Q.Seq.d/                       1247   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1168   0.0    9
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    38   2e-13  6
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   2e-10  4
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   3e-10  4
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    38   9e-10  5
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   6e-09  3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
CF609274|CF609274.1 INFIO01_000052 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    56   4e-08  3
dna update 2004. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   522   e-150
AY383736_1(AY383736|pid:none) Glycine max 3-ketoacyl-CoA thiolas...   286   9e-76
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   284   4e-75
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   284   4e-75
AK222103_1(AK222103|pid:none) Arabidopsis thaliana mRNA for 3-ke...   224   4e-75
AC126019_22(AC126019|pid:none) Medicago truncatula clone mth2-22...   283   8e-75
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   283   8e-75
AF062589_2(AF062589|pid:none) Arabidopsis thaliana 3-keto-acyl-C...   282   1e-74
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   282   1e-74
AK230209_1(AK230209|pid:none) Arabidopsis thaliana mRNA for pero...   282   2e-74
protein update 2009. 5.28
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFL240 is end
5' end seq. ID SFL240F
5' end seq. 
>SFL240F.Seq
ATTTTTNTATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAG
AATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTC
TGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTG
TAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTAT
TAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGG
AGCAGTATTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAG
CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC
AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG
GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGG----------
Length of 5' end seq. 519
3' end seq. ID SFL240Z
3' end seq. 
>SFL240Z.Seq
----------AATGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTC
TGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAAT
CGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGG
TATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGG
TGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGT
TATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTT
TGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGC
CGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGC
TTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAA
TCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAG
GCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGNATCTCTATG
Length of 3' end seq. 646
Connected seq. ID SFL240P
Connected seq. 
>SFL240P.Seq
ATTTTTNTATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAG
AATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTC
TGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTG
TAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTAT
TAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGG
AGCAGTATTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAG
CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC
AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG
GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGG----------AATGTCGCAGA
GCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGC
AGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGAC
CGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGT
TGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAA
CTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGA
AAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACC
ATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCT
CACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTA
CAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGC
TTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAGGCTACCATTTCAAGAGAATTA
CATCGTCGTAAAGGTAAATATGGTGNATCTCTATG
Length of connected seq. 1165
Full length Seq ID -
Full length Seq. -
Length of full length seq. -