SFL222
Library SF
(Link to library)
Clone ID SFL222
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16306-1
Original site URL
Representative seq. ID SFL222P
(Link to Original site)
Representative DNA sequence
>SFL222 (SFL222Q) /CSM/SF/SFL2-A/SFL222Q.Seq.d/
TTACCTCATGTACTGAGGCAATTGAAATGATCTCAAAACTTCCACAAGAAGTATTTGAAA
AAAGTACAAGAACAGCAACAAAGAAATTATTAGCATCAATTGGTTTAGTGACAATTGGTA
CATATTTAGTATATGCACTTCCATGGTATTTGTTACCAATTGGATGGATATTTATGGGTA
CAGCATGTTGTGGATTATTCTCTGTTGGGTATGCATGTGGTAATGATTTATTTTTCAAGA
ATAAATTTGTTAACTATGTAGTTGGAACAATTTGTATGTTACCATTAATGTATCCATTAG
CCTATTGGAAGAAAAGAATTGAAAAGAAAGCAACAGCAAGTCGTGATTTCGTTCGTGAGA
TTGCAAGTGGTAATTTTTGGTTCCTCAGTTCATTACTTCAATGGTTATCATTAAATTTCA
GTTTCAAATTCTCCAAATCAATGATGGTCTCAGTCTCATTCCTTTATGTATTCATCGCAT
TATTCTTCCCAATTATGACCTACAGTATGGGCATTTGGGGTTTATTCAAGTACTATTTGA
TCCCATTGTTTGTGTACCACTTTTGGATGTCAACATTCCTCAAGGCTTCATCTCTCTCAA
XXXXXXXXXXTCCAACATAAATATTTCATTCCATTGGCATTCAGTTTGGGTTGGTTCTTA
CCAATGTTCATTTGTGGTTTTGGTTGGAATGATTGGAAAGGTGGATTTTTCATCGCTGGT
GTTGCCTCCAAAGTACTCATGATGCAATGTACCTTTTGTATCAACTCTTTGGCTCATTAT
CTTGGTGAAGCAACTTACACCGACCAAAGATCTCCACGTGACTCTTTTATCACATCTTTG
GTCACTTTTGGTGAAGGTTATCATAACTTTCATCATGAATTCCCATATGATTACAGAAAT
GGTATTCATATGTCTGCTTACGATCCAGGTAAGTGGTTAATCAATTTCCTTAGTTGGTTT
GGTTTCGCCTATGAATTAAAGAGATTCCCAAGTGAATTATTCGCAAAAGGTAAAATTCAA
ATGCAAGAGAAAACCATCAAAAAATTACGTGATCAACTCTATTGGGGTAAACCATTGGAT
CAATTACCATCATTCACTCGTGCTCAAGTTAAAGAGAAATGTCAAAAAGAAAAGAAACAA
CTCTTAATCATTGAAGATGTTATCTATGATATGTCTGAATTTGCTGAAAAACATCCAGGT
GGTAAACAATACATTGACGGTTATATTGGTAAAGATGCAACTAAAGCTTTTAATGGTTTA
GTTTAAATCATTCATTTGCTGCTAGAAATATTGGATCTTTATAGAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
TSCTEAIEMISKLPQEVFEKSTRTATKKLLASIGLVTIGTYLVYALPWYLLPIGWIFMGT
ACCGLFSVGYACGNDLFFKNKFVNYVVGTICMLPLMYPLAYWKKRIEKKATASRDFVREI
ASGNFWFLSSLLQWLSLNFSFKFSKSMMVSVSFLYVFIALFFPIMTYSMGIWGLFKYYLI
PLFVYHFWMSTFLKASSLS---

---QHKYFIPLAFSLGWFLPMFICGFGWNDWKGGFFIAGVASKVLMMQCTFCINSLAHYL
GEATYTDQRSPRDSFITSLVTFGEGYHNFHHEFPYDYRNGIHMSAYDPGKWLINFLSWFG
FAYELKRFPSELFAKGKIQMQEKTIKKLRDQLYWGKPLDQLPSFTRAQVKEKCQKEKKQL
LIIEDVIYDMSEFAEKHPGGKQYIDGYIGKDATKAFNGLV*iihllleildlyr


Translated Amino Acid sequence (All Frames)
Frame A:
lphvlrqlk*sqnfhkkylkkvqeqqqrny*hqlv**qlvhi*ymhfhgicyqldgylwv
qhvvdysllgmhvvmiyfsrinlltm*leqfvcyh*cih*pigrkelkrkqqqvvisfvr
lqvvifgssvhyfngyh*isvsnspnq*wsqshsfmysshyssql*ptvwafgvyssti*
shclcttfgcqhssrlhlsq---

---sninisfhwhsvwvgsyqcsfvvlvgmigkvdfsslvlppkys*cnvpfvstlwlii
lvkqltptkdlhvtllshlwsllvkviitfimnshmitemvficlltiqvsg*sislvgl
vspmn*rdsqvnysqkvkfkckrkpsknyvinsigvnhwinyhhslvlklkrnvkkkrnn
s*slkmlsmiclnllkniqvvnntltvilvkmqlkllmv*fksficc*kywifie

Frame B:
ylmy*gn*ndlktstrsi*kkyknsnkeiisinwfsdnwyifsictsmvfvtnwmdiygy
smlwiilcwvcmw**fifqe*ic*lcswnnlyvtinvsislleekn*kesnsks*frs*d
ckw*flvpqfitsmviikfqfqilqindglsliplcihriilpnydlqyghlgfiqvlfd
pivcvplldvnipqgfisl---

---pt*ifhsigiqfglvltnvhlwfwle*lerwifhrwcclqsthdamyllyqlfgsls
w*snlhrpkist*lfyhifghfw*rls*lss*ipi*lqkwysyvclrsr*vvnqfp*lvw
frl*ikeipk*iirkr*nsnarenhqkit*stllg*tigsitiihscss*remskrkett
lnh*rcyl*yv*ic*ktsrw*tih*rlyw*rcn*sf*wfslnhsfaarnigsl*

Frame C:
TSCTEAIEMISKLPQEVFEKSTRTATKKLLASIGLVTIGTYLVYALPWYLLPIGWIFMGT
ACCGLFSVGYACGNDLFFKNKFVNYVVGTICMLPLMYPLAYWKKRIEKKATASRDFVREI
ASGNFWFLSSLLQWLSLNFSFKFSKSMMVSVSFLYVFIALFFPIMTYSMGIWGLFKYYLI
PLFVYHFWMSTFLKASSLS---

---QHKYFIPLAFSLGWFLPMFICGFGWNDWKGGFFIAGVASKVLMMQCTFCINSLAHYL
GEATYTDQRSPRDSFITSLVTFGEGYHNFHHEFPYDYRNGIHMSAYDPGKWLINFLSWFG
FAYELKRFPSELFAKGKIQMQEKTIKKLRDQLYWGKPLDQLPSFTRAQVKEKCQKEKKQL
LIIEDVIYDMSEFAEKHPGGKQYIDGYIGKDATKAFNGLV*iihllleildlyr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL222 (SFL222Q) /CSM/SF/SFL2-A/SFL222Q.Seq.d/ 2529 0.0
CHO352 (CHO352Q) /CSM/CH/CHO3-C/CHO352Q.Seq.d/ 1366 0.0
VHM540 (VHM540Q) /CSM/VH/VHM5-B/VHM540Q.Seq.d/ 1358 0.0
CHN780 (CHN780Q) /CSM/CH/CHN7-D/CHN780Q.Seq.d/ 1358 0.0
VHL116 (VHL116Q) /CSM/VH/VHL1-A/VHL116Q.Seq.d/ 1342 0.0
VHO360 (VHO360Q) /CSM/VH/VHO3-C/VHO360Q.Seq.d/ 1332 0.0
VHD238 (VHD238Q) /CSM/VH/VHD2-B/VHD238Q.Seq.d/ 1332 0.0
VHC619 (VHC619Q) /CSM/VH/VHC6-A/VHC619Q.Seq.d/ 1332 0.0
VHB877 (VHB877Q) /CSM/VH/VHB8-D/VHB877Q.Seq.d/ 1332 0.0
VHA359 (VHA359Q) /CSM/VH/VHA3-C/VHA359Q.Seq.d/ 1332 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 74 6e-09 1
AR016873|AR016873.1 Sequence 1 from patent US 5777201. 56 5e-08 3
AL033501|AL033501.1 C.albicans cosmid Ca41C10. 70 9e-08 1
Z72577|Z72577.1 S.cerevisiae chromosome VII reading frame ORF YGL055w. 56 3e-07 3
AQ874658|AQ874658.1 V112D8 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence. 56 4e-07 2
J05676|J05676.1 Saccharomyces cerevisiae delta-9 fatty acid desaturase (OLE1) gene, complete cds. 56 3e-04 2
AL396412|AL396412.1 T3 end of clone AR0AA030B05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 56 0.001 1
AL117199|AL117199.1 Caenorhabditis elegans YAC Y43F11A. 42 0.003 2
BM027442|BM027442.1 GIT0000801 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence. 54 0.005 1
AB024576|AB024576.1 Pichia angusta H-OLE1 gene for delta9-fatty acid desaturase, complete cds. 54 0.005 1
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY995173_1(AY995173|pid:none) Amylomyces rouxii delta-9 desatura... 234 5e-60
AB196774_1(AB196774|pid:none) Mortierella alpina gene for omega9... 226 1e-57
AF085500_1(AF085500|pid:none) Mortierella alpina delta nine desa... 219 2e-55
Y18553_1(Y18553|pid:none) Mortierella alpina ole1 gene for stear... 218 3e-55
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 216 2e-54
AB195980_1(AB195980|pid:none) Mortierella alpina gene for omega9... 214 5e-54
AP007151_392(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 211 4e-53
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 208 4e-52
CR382123_238(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 207 5e-52
AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 206 1e-51
protein update 2009. 5.28
PSORT

psg: 0.75 gvh: 0.50 alm: 0.24 top: 0.47 tms: 0.33 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
28.0 %: plasma membrane
16.0 %: mitochondrial
4.0 %: Golgi
4.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SFL222 is end

5' end seq. ID SFL222F
5' end seq.
>SFL222F.Seq
TTACCTCATGTACTGAGGCAATTGAAATGATCTCAAAACTTCCACAAGAAGTATTTGAAA
AAAGTACAAGAACAGCAACAAAGAAATTATTAGCATCAATTGGTTTAGTGACAATTGGTA
CATATTTAGTATATGCACTTCCATGGTATTTGTTACCAATTGGATGGATATTTATGGGTA
CAGCATGTTGTGGATTATTCTCTGTTGGGTATGCATGTGGTAATGATTTATTTTTCAAGA
ATAAATTTGTTAACTATGTAGTTGGAACAATTTGTATGTTACCATTAATGTATCCATTAG
CCTATTGGAAGAAAAGAATTGAAAAGAAAGCAACAGCAAGTCGTGATTTCGTTCGTGAGA
TTGCAAGTGGTAATTTTTGGTTCCTCAGTTCATTACTTCAATGGTTATCATTAAATTTCA
GTTTCAAATTCTCCAAATCAATGATGGTCTCAGTCTCATTCCTTTATGTATTCATCGCAT
TATTCTTCCCAATTATGACCTACAGTATGGGCATTTGGGGTTTATTCAAGTACTATTTGA
TCCCATTGTTTGTGTACCACTTTTGGATGTCAACATTCCTCAAGGCTTCATCTCTCTCAA
----------
Length of 5' end seq. 600
3' end seq. ID SFL222Z
3' end seq.
>SFL222Z.Seq
----------TCCAACATAAATATTTCATTCCATTGGCATTCAGTTTGGGTTGGTTCTTA
CCAATGTTCATTTGTGGTTTTGGTTGGAATGATTGGAAAGGTGGATTTTTCATCGCTGGT
GTTGCCTCCAAAGTACTCATGATGCAATGTACCTTTTGTATCAACTCTTTGGCTCATTAT
CTTGGTGAAGCAACTTACACCGACCAAAGATCTCCACGTGACTCTTTTATCACATCTTTG
GTCACTTTTGGTGAAGGTTATCATAACTTTCATCATGAATTCCCATATGATTACAGAAAT
GGTATTCATATGTCTGCTTACGATCCAGGTAAGTGGTTAATCAATTTCCTTAGTTGGTTT
GGTTTCGCCTATGAATTAAAGAGATTCCCAAGTGAATTATTCGCAAAAGGTAAAATTCAA
ATGCAAGAGAAAACCATCAAAAAATTACGTGATCAACTCTATTGGGGTAAACCATTGGAT
CAATTACCATCATTCACTCGTGCTCAAGTTAAAGAGAAATGTCAAAAAGAAAAGAAACAA
CTCTTAATCATTGAAGATGTTATCTATGATATGTCTGAATTTGCTGAAAAACATCCAGGT
GGTAAACAATACATTGACGGTTATATTGGTAAAGATGCAACTAAAGCTTTTAATGGTTTA
GTTTAAATCATTCATTTGCTGCTAGAAATATTGGATCTTTATAGAG
Length of 3' end seq. 696
Connected seq. ID SFL222P
Connected seq.
>SFL222P.Seq
TTACCTCATGTACTGAGGCAATTGAAATGATCTCAAAACTTCCACAAGAAGTATTTGAAA
AAAGTACAAGAACAGCAACAAAGAAATTATTAGCATCAATTGGTTTAGTGACAATTGGTA
CATATTTAGTATATGCACTTCCATGGTATTTGTTACCAATTGGATGGATATTTATGGGTA
CAGCATGTTGTGGATTATTCTCTGTTGGGTATGCATGTGGTAATGATTTATTTTTCAAGA
ATAAATTTGTTAACTATGTAGTTGGAACAATTTGTATGTTACCATTAATGTATCCATTAG
CCTATTGGAAGAAAAGAATTGAAAAGAAAGCAACAGCAAGTCGTGATTTCGTTCGTGAGA
TTGCAAGTGGTAATTTTTGGTTCCTCAGTTCATTACTTCAATGGTTATCATTAAATTTCA
GTTTCAAATTCTCCAAATCAATGATGGTCTCAGTCTCATTCCTTTATGTATTCATCGCAT
TATTCTTCCCAATTATGACCTACAGTATGGGCATTTGGGGTTTATTCAAGTACTATTTGA
TCCCATTGTTTGTGTACCACTTTTGGATGTCAACATTCCTCAAGGCTTCATCTCTCTCAA
----------TCCAACATAAATATTTCATTCCATTGGCATTCAGTTTGGGTTGGTTCTTA
CCAATGTTCATTTGTGGTTTTGGTTGGAATGATTGGAAAGGTGGATTTTTCATCGCTGGT
GTTGCCTCCAAAGTACTCATGATGCAATGTACCTTTTGTATCAACTCTTTGGCTCATTAT
CTTGGTGAAGCAACTTACACCGACCAAAGATCTCCACGTGACTCTTTTATCACATCTTTG
GTCACTTTTGGTGAAGGTTATCATAACTTTCATCATGAATTCCCATATGATTACAGAAAT
GGTATTCATATGTCTGCTTACGATCCAGGTAAGTGGTTAATCAATTTCCTTAGTTGGTTT
GGTTTCGCCTATGAATTAAAGAGATTCCCAAGTGAATTATTCGCAAAAGGTAAAATTCAA
ATGCAAGAGAAAACCATCAAAAAATTACGTGATCAACTCTATTGGGGTAAACCATTGGAT
CAATTACCATCATTCACTCGTGCTCAAGTTAAAGAGAAATGTCAAAAAGAAAAGAAACAA
CTCTTAATCATTGAAGATGTTATCTATGATATGTCTGAATTTGCTGAAAAACATCCAGGT
GGTAAACAATACATTGACGGTTATATTGGTAAAGATGCAACTAAAGCTTTTAATGGTTTA
GTTTAAATCATTCATTTGCTGCTAGAAATATTGGATCTTTATAGAG
Length of connected seq. 1296
Full length Seq ID -
Full length Seq. -
Length of full length seq. -