SFL214
Library SF
(Link to library)
Clone ID SFL214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10001-1
Original site URL
Representative seq. ID SFL214E
(Link to Original site)
Representative DNA sequence
>SFL214 (SFL214Q) /CSM/SF/SFL2-A/SFL214Q.Seq.d/
GTGTTAAATTTAAGTAATATTATATATATATATTATTNATATATATACCAATATATTTAT
ATAAAAAATGGAACAAGCAATTTTAAGAATTAATAATATATCTAGTCAATTAACAGGTAA
ATGTCCATTCAAAGCACATGGTGGTGGAGCAGGTAAATGTCCATATAAACTTGGTGGTGG
ACAAATTTTAGATCAAAGTAAAGCCTGGTCATTAGTTAATGTTACAGCAAATGTTGATCA
AGTTACACCAATTAAAGTATTAGTTACAGGAGCAGCAGGTCAAATTGCATATTCATTAAT
GTTTATGATTGCAAGTGGTCAAATGTTTGGACCACATCAACCAGTGATCTTACATTTATT
AGATATTCCAAAGATGGCTGACGCATTGAAGGGTGTAGTTATGGAATTACAAGATTGCTC
CTACCCATTATTACAATCAGTTGTTGCTACAACCGATATTCAAACAGCATTCCTTCATAT
TAATGTCGCCATTTTAGTTGGTGCTTTCCCACGTGGTCCAGGTATGCAAAGAAAAGGATT
TATTAAAAGTCAACGTTTCAATCTTTAAAGAACAAGGTGAAGCCTTAAATAAATATGCAT
CAAGAGGTGTTAAAGTTTTAGTTGTAGGTAATCCAGCAAACACCAATGCACTCACTGCAC
TCATGAAAGCTTCAGATTTACCAACTTCAAATTTCTCTGCTCTCACTAGATTAGATCAAA
ATCGTGCTCAATCTATGATCTCTGAAAAAGTTGGTACAAATGTTGATAATGTTCATAATG
TTATAATTTGGGGTAATCATTCTCAAACTCAAGTACCAGATGTTAATCATGGTTATATTT
TAAATTATCCAAATCGTGGTTTAATTGAACCAATTCCATCATCAGTTAATGATGATAAAT
GGTTAAATGAACAATTTATTCCATTAGTTCAAAATAGAGGTGCAACAGTTATTGCAGCAA
GAAAATTATCATCAGCTGCTTCAGCTGCCAATGCAATCGTTGGTCATGTTAGAGATTGGT
TATTAGGTACTAAAGATGGTGAACATGTTTCAATGGCTGTTTATTCCGATGGTTCTTATA
ATGTTCCAAAAGGTTTAATCTTTTCATTCCCAGTAACTTGTCATAATGGTCAANGGACAA
TCGTTCAAGGTTTAAAAATANTTCTTCANCTCNNCAAAAAATAGATGCCACAATTAAAGA
A
sequence update 2001. 6. 9
Translated Amino Acid sequence
vkfk*yyiyilxiyipiylykkwnkqf*eliiylvn*qvnvhskhmvveqvnvhinlvvd
kf*ikvkpgh*lmlqqmliklhqlky*lqeqqvklhih*cl*lqvvkcldhinq*syiy*
ifqrwlth*rv*lwnykiapthyynqlllqpifkqhsfilmspf*LVLSHVVQVCKEKDL
LKVNVSIFKEQGEALNKYASRGVKVLVVGNPANTNALTALMKASDLPTSNFSALTRLDQN
RAQSMISEKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYILNYPNRGLIEPIPSSVNDDKW
LNEQFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYN
VPKGLIFSFPVTCHNGQXTIVQGLKIXLXLXKK*mpqlk


Translated Amino Acid sequence (All Frames)
Frame A:
vlnlsniiyiyyxyiyqyiyikngtsnfkn**yi*sinr*msiqstwwwsr*msi*twww
tnfrsk*slvis*cyskc*ssytn*sisyrssrsncifinvydckwsnvwttstsdltfi
ryskdg*riegcsygitrlllpiitisccynrysnsipsy*crhfswcfptwsryakkri
y*kstfqslknkvkp*inmhqevlkf*l*viqqtpmhslhs*klqiyqlqisllsld*ik
ivlnl*slkklvqmlimfiml*fgviilklkyqmlimvif*iiqivv*lnqfhhqlmmin
g*mnnlfh*fkievqqllqqenyhqllqlpmqslvmleigy*vlkmvnmfqwlfipmvli
mfqkv*sfhsq*lvimvxgqsfkv*kxffxsxknrchn*r


Frame B:
c*i*vilyiyiixiytnifi*kmeqailrinnissqltgkcpfkahgggagkcpyklggg
qildqskawslvnvtanvdqvtpikvlvtgaagqiayslmfmiasgqmfgphqpvilhll
dipkmadalkgvvmelqdcsypllqsvvattdiqtaflhinvailvgafprgpgmqrkgf
iksqrfnl*rtr*slk*icikrc*sfscr*sskhqcthcthesfrftnfkflcsh*irsk
scsiydl*kswykc**cs*cynlg*sfsnsstrc*swlyfklskswfn*tnsiis****m
vk*tiysissk*rcnsycskkiiiscfscqcnrwsc*rlviry*rw*tcfngclfrwfl*
cskrfnlfipsnls*wsxdnrsrfknxssxxqkidatike


Frame C:
vkfk*yyiyilxiyipiylykkwnkqf*eliiylvn*qvnvhskhmvveqvnvhinlvvd
kf*ikvkpgh*lmlqqmliklhqlky*lqeqqvklhih*cl*lqvvkcldhinq*syiy*
ifqrwlth*rv*lwnykiapthyynqlllqpifkqhsfilmspf*LVLSHVVQVCKEKDL
LKVNVSIFKEQGEALNKYASRGVKVLVVGNPANTNALTALMKASDLPTSNFSALTRLDQN
RAQSMISEKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYILNYPNRGLIEPIPSSVNDDKW
LNEQFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYN
VPKGLIFSFPVTCHNGQXTIVQGLKIXLXLXKK*mpqlk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL214 (SFL214Q) /CSM/SF/SFL2-A/SFL214Q.Seq.d/ 2226 0.0
VFL380 (VFL380Q) /CSM/VF/VFL3-D/VFL380Q.Seq.d/ 2189 0.0
AFJ250 (AFJ250Q) /CSM/AF/AFJ2-C/AFJ250Q.Seq.d/ 2173 0.0
VFI622 (VFI622Q) /CSM/VF/VFI6-A/VFI622Q.Seq.d/ 2145 0.0
VFH705 (VFH705Q) /CSM/VF/VFH7-A/VFH705Q.Seq.d/ 2121 0.0
AFI745 (AFI745Q) /CSM/AF/AFI7-B/AFI745Q.Seq.d/ 1273 0.0
SFJ109 (SFJ109Q) /CSM/SF/SFJ1-A/SFJ109Q.Seq.d/ 1233 0.0
VFL665 (VFL665Q) /CSM/VF/VFL6-C/VFL665Q.Seq.d/ 1221 0.0
AFK292 (AFK292Q) /CSM/AF/AFK2-D/AFK292Q.Seq.d/ 1217 0.0
VFK667 (VFK667Q) /CSM/VF/VFK6-C/VFK667Q.Seq.d/ 1195 0.0

own update 2001.12. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ672431|AZ672431.1 ENTMD91TF Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence. 74 9e-17 3
BH166705|BH166705.1 ENTSU36TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 1e-16 3
AF248632|AF248632.1 Entamoeba histolytica NAD-specific malate dehydrogenase 1 (Mdh1) gene, complete cds. 74 2e-16 3
AZ528199|AZ528199.1 ENTBY57TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 6e-14 2
BH157242|BH157242.1 ENTTR36TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 64 5e-11 2
BH130836|BH130836.1 ENTMY39TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 3e-09 2
AZ549943|AZ549943.1 ENTGT43TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 5e-09 1
BH154539|BH154539.1 ENTSE16TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 5e-09 1
AZ684282|AZ684282.1 ENTMV84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 5e-09 1
AR317645|AR317645.1 Sequence 195 from patent US 6562958. 50 9e-08 4
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GE6) RecName: Full=Probable malate dehydrogenase 1; ... 388 0.0
FN357369_56(FN357369|pid:none) Schistosoma mansoni genome sequen... 226 2e-85
AB264544_1(AB264544|pid:none) Iris x hollandica IhMDH1 mRNA for ... 218 4e-85
AF459646_1(AF459646|pid:none) Lupinus albus malate dehydrogenase... 219 1e-84
FB851793_1(FB851793|pid:none) Sequence 71066 from Patent WO20080... 215 2e-84
(O24047) RecName: Full=Malate dehydrogenase, cytoplasmic; ... 215 6e-84
FB851795_1(FB851795|pid:none) Sequence 71068 from Patent WO20080... 213 6e-84
(O48905) RecName: Full=Malate dehydrogenase, cytoplasmic; ... 215 1e-83
AC122161_21(AC122161|pid:none) Medicago truncatula clone mth2-11... 215 1e-83
AJ299059_1(AJ299059|pid:none) Cicer arietinum mRNA for cytosolic... 212 1e-83
protein update 2009. 7. 4
PSORT

psg: 0.43 gvh: 0.48 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SFL214 is cyt

5' end seq. ID SFL214F
5' end seq.
>SFL214F.Seq
GTGTTAAATTTAAGTAATATTATATATATATATTATTNATATATATACCAATATATTTAT
ATAAAAAATGGAACAAGCAATTTTAAGAATTAATAATATATCTAGTCAATTAACAGGTAA
ATGTCCATTCAAAGCACATGGTGGTGGAGCAGGTAAATGTCCATATAAACTTGGTGGTGG
ACAAATTTTAGATCAAAGTAAAGCCTGGTCATTAGTTAATGTTACAGCAAATGTTGATCA
AGTTACACCAATTAAAGTATTAGTTACAGGAGCAGCAGGTCAAATTGCATATTCATTAAT
GTTTATGATTGCAAGTGGTCAAATGTTTGGACCACATCAACCAGTGATCTTACATTTATT
AGATATTCCAAAGATGGCTGACGCATTGAAGGGTGTAGTTATGGAATTACAAGATTGCTC
CTACCCATTATTACAATCAGTTGTTGCTACAACCGATATTCAAACAGCATTCCTTCATAT
TAATGTCGCCATTTTAGTTGGTGCTTTCCCACGTGGTCCAGGTATGCAAAGAAAGGATTT
ATTAAAAGTCAACGTTTCAATCTTTAAAGAACAAGGTGAAGCCTTAAATAAATATGCA--
--------
Length of 5' end seq. 598
3' end seq. ID SFL214Z
3' end seq.
>SFL214Z.Seq
----------CAGGTATGCAAAGAAAAGGATTTATTAAAAGTCAACGTTTCAATCTTTAA
AGAACAAGGTGAAGCCTTAAATAAATATGCATCAAGAGGTGTTAAAGTTTTAGTTGTAGG
TAATCCAGCAAACACCAATGCACTCACTGCACTCATGAAAGCTTCAGATTTACCAACTTC
AAATTTCTCTGCTCTCACTAGATTAGATCAAAATCGTGCTCAATCTATGATCTCTGAAAA
AGTTGGTACAAATGTTGATAATGTTCATAATGTTATAATTTGGGGTAATCATTCTCAAAC
TCAAGTACCAGATGTTAATCATGGTTATATTTTAAATTATCCAAATCGTGGTTTAATTGA
ACCAATTCCATCATCAGTTAATGATGATAAATGGTTAAATGAACAATTTATTCCATTAGT
TCAAAATAGAGGTGCAACAGTTATTGCAGCAAGAAAATTATCATCAGCTGCTTCAGCTGC
CAATGCAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAAGATGGTGAACATGT
TTCAATGGCTGTTTATTCCGATGGTTCTTATAATGTTCCAAAAGGTTTAATCTTTTCATT
CCCAGTAACTTGTCATAATGGTCAANGGACAATCGTTCAAGGTTTAAAAATANTTCTTCA
NCTCNNCAAAAAATAGATGCCACAATTAAAGAA
Length of 3' end seq. 683
Connected seq. ID SFL214P
Connected seq.
>SFL214P.Seq
GTGTTAAATTTAAGTAATATTATATATATATATTATTNATATATATACCAATATATTTAT
ATAAAAAATGGAACAAGCAATTTTAAGAATTAATAATATATCTAGTCAATTAACAGGTAA
ATGTCCATTCAAAGCACATGGTGGTGGAGCAGGTAAATGTCCATATAAACTTGGTGGTGG
ACAAATTTTAGATCAAAGTAAAGCCTGGTCATTAGTTAATGTTACAGCAAATGTTGATCA
AGTTACACCAATTAAAGTATTAGTTACAGGAGCAGCAGGTCAAATTGCATATTCATTAAT
GTTTATGATTGCAAGTGGTCAAATGTTTGGACCACATCAACCAGTGATCTTACATTTATT
AGATATTCCAAAGATGGCTGACGCATTGAAGGGTGTAGTTATGGAATTACAAGATTGCTC
CTACCCATTATTACAATCAGTTGTTGCTACAACCGATATTCAAACAGCATTCCTTCATAT
TAATGTCGCCATTTTAGTTGGTGCTTTCCCACGTGGTCCAGGTATGCAAAGAAAGGATTT
ATTAAAAGTCAACGTTTCAATCTTTAAAGAACAAGGTGAAGCCTTAAATAAATATGCA--
--------CAGGTATGCAAAGAAAAGGATTTATTAAAAGTCAACGTTTCAATCTTTAAAG
AACAAGGTGAAGCCTTAAATAAATATGCATCAAGAGGTGTTAAAGTTTTAGTTGTAGGTA
ATCCAGCAAACACCAATGCACTCACTGCACTCATGAAAGCTTCAGATTTACCAACTTCAA
ATTTCTCTGCTCTCACTAGATTAGATCAAAATCGTGCTCAATCTATGATCTCTGAAAAAG
TTGGTACAAATGTTGATAATGTTCATAATGTTATAATTTGGGGTAATCATTCTCAAACTC
AAGTACCAGATGTTAATCATGGTTATATTTTAAATTATCCAAATCGTGGTTTAATTGAAC
CAATTCCATCATCAGTTAATGATGATAAATGGTTAAATGAACAATTTATTCCATTAGTTC
AAAATAGAGGTGCAACAGTTATTGCAGCAAGAAAATTATCATCAGCTGCTTCAGCTGCCA
ATGCAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAAGATGGTGAACATGTTT
CAATGGCTGTTTATTCCGATGGTTCTTATAATGTTCCAAAAGGTTTAATCTTTTCATTCC
CAGTAACTTGTCATAATGGTCAANGGACAATCGTTCAAGGTTTAAAAATANTTCTTCANC
TCNNCAAAAAATAGATGCCACAATTAAAGAA
Length of connected seq. 1281
Full length Seq ID SFL214E
Full length Seq.
>SFL214E.Seq
GTGTTAAATTTAAGTAATATTATATATATATATTATTNATATATATACCAATATATTTAT
ATAAAAAATGGAACAAGCAATTTTAAGAATTAATAATATATCTAGTCAATTAACAGGTAA
ATGTCCATTCAAAGCACATGGTGGTGGAGCAGGTAAATGTCCATATAAACTTGGTGGTGG
ACAAATTTTAGATCAAAGTAAAGCCTGGTCATTAGTTAATGTTACAGCAAATGTTGATCA
AGTTACACCAATTAAAGTATTAGTTACAGGAGCAGCAGGTCAAATTGCATATTCATTAAT
GTTTATGATTGCAAGTGGTCAAATGTTTGGACCACATCAACCAGTGATCTTACATTTATT
AGATATTCCAAAGATGGCTGACGCATTGAAGGGTGTAGTTATGGAATTACAAGATTGCTC
CTACCCATTATTACAATCAGTTGTTGCTACAACCGATATTCAAACAGCATTCCTTCATAT
TAATGTCGCCATTTTAGTTGGTGCTTTCCCACGTGGTCCAGGTATGCAAAGAAAAGGATT
TATTAAAAGTCAACGTTTCAATCTTTAAAGAACAAGGTGAAGCCTTAAATAAATATGCAT
CAAGAGGTGTTAAAGTTTTAGTTGTAGGTAATCCAGCAAACACCAATGCACTCACTGCAC
TCATGAAAGCTTCAGATTTACCAACTTCAAATTTCTCTGCTCTCACTAGATTAGATCAAA
ATCGTGCTCAATCTATGATCTCTGAAAAAGTTGGTACAAATGTTGATAATGTTCATAATG
TTATAATTTGGGGTAATCATTCTCAAACTCAAGTACCAGATGTTAATCATGGTTATATTT
TAAATTATCCAAATCGTGGTTTAATTGAACCAATTCCATCATCAGTTAATGATGATAAAT
GGTTAAATGAACAATTTATTCCATTAGTTCAAAATAGAGGTGCAACAGTTATTGCAGCAA
GAAAATTATCATCAGCTGCTTCAGCTGCCAATGCAATCGTTGGTCATGTTAGAGATTGGT
TATTAGGTACTAAAGATGGTGAACATGTTTCAATGGCTGTTTATTCCGATGGTTCTTATA
ATGTTCCAAAAGGTTTAATCTTTTCATTCCCAGTAACTTGTCATAATGGTCAANGGACAA
TCGTTCAAGGTTTAAAAATANTTCTTCANCTCNNCAAAAAATAGATGCCACAATTAAAGA
A
Length of full length seq. 1201