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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL208
Library SF
(Link to library)
Clone ID SFL208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11924-1
Original site URL
Representative seq. ID SFL208P
(Link to Original site)
Representative DNA sequence 
>SFL208 (SFL208Q) /CSM/SF/SFL2-A/SFL208Q.Seq.d/
CAATAATAATAATAATAATAATAATAATAATAATAATGATAATAGGTGGTTCAACATCAC
CAACAGATATTGCAAATGAAAGACAAATCAATGTACATAGAACAGATGTTCAATTAGCAT
CATCAGCAATTTTACAGAATATAACAGAATTTAGATTTGAAAAAGGTGAAATTAATCCAA
ACCAAGTGAAGATCGTTAATGAAGGTATAGTTGATTTAATTCTAATACCAAGATCCAAGA
GTACAGATAAAAGAGTTCAATTCTTAACAACACTCACTATTGCAAACTTATCAATGAATG
ATGAAAATCATACAGCACTTACAAAATCAAAAGCATTTGATGTGGTTGAAGCATTTGTAA
CTTCAAATTCTTTACATATGGATTTAGTTTGTCATTGGATAACTTTACAACCTCATATAC
CTTTATTACATTCAAAATATCATCAAGTTCAATTATTTGCATTATATTGTCTATATAATT
TAATAAGGAATGAACAATATAAAGTTTGAAGTTTGGAAAGGATTAAGTGTAAXXXXXXXX
XXTATTACATTCCAATGCATCCAAAAGTTGTTGAATTAGCAAAAAAGATAGCAGATCAAT
TACAGATTGAAGAACCATCAGTCACTGTGAATACAACAAAGATTGGTACAGATTTGAAAA
AGTTATTTAATAATCAAGAATATTCAGATGTTATATTCACATGTGAAGGAAAGAAATTGT
ATGCACATAAAGCGATTTGTGCATCGAGATGCGAACAATTGAGAGCAATGTTCACTTGGG
GTAAGGAATCAAAAGAACAAGATATCAATCTACCACATACACCCTACTGTGCGATGTATG
GTGTGTTAGAGTACATCTATTGTGGTCAAGCTACTATCATTTGGGAGAATGCATGTGATC
TATTGCAATGGGCTGATTTCTTTTCTTTGGCTGGTTTAAAAAGTAGTTGTGAATTTTATT
TATGGCATTATATTGATTTAGAGAATGCTCCTATCATTTTGACTGTAGCTGATCGTTATC
GTTGTACTCAATTAAGAAATGTAGCCGCTAACTTTGTTCTTAGAAATTGGGATAAAATTA
AAGATTCTGACGTTTGGATAAATCAAGTCACTGTTGATGTTAAAAATTATATCTCTGAAA
GAATTTATTCTTTAATAACTTGTTCTTGTGGTTGTATTTGTAGTTGTGTTGATGATGCTA
AAAATAATAATGCAAATTCTCCTTCTCAAATTGTTATAAAATTAAATCAATAATTAAAAA
AAAATCAAAATCAAATCAAAATC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
q**************vvqhhqqilqmkdksmyieqmfn*hhqqfyri*qnldlkkvkliq
tk*rslmkv*li*f*yqdprvqikefns*qhsllqtyq*mmkiiqhlqnqkhlmwlkhl*
lqilyiwi*fvig*lynliylyyiqniikfnylhyivyii**GMNNIKFEVWKGLSV---

---YYIPMHPKVVELAKKIADQLQIEEPSVTVNTTKIGTDLKKLFNNQEYSDVIFTCEGK
KLYAHKAICASRCEQLRAMFTWGKESKEQDINLPHTPYCAMYGVLEYIYCGQATIIWENA
CDLLQWADFFSLAGLKSSCEFYLWHYIDLENAPIILTVADRYRCTQLRNVAANFVLRNWD
KIKDSDVWINQVTVDVKNYISERIYSLITCSCGCICSCVDDAKNNNANSPSQIVIKLNQ*
lkknqnqiki
Translated Amino Acid sequence (All Frames) 
Frame A:
q**************vvqhhqqilqmkdksmyieqmfn*hhqqfyri*qnldlkkvkliq
tk*rslmkv*li*f*yqdprvqikefns*qhsllqtyq*mmkiiqhlqnqkhlmwlkhl*
lqilyiwi*fvig*lynliylyyiqniikfnylhyivyii**GMNNIKFEVWKGLSV---

---YYIPMHPKVVELAKKIADQLQIEEPSVTVNTTKIGTDLKKLFNNQEYSDVIFTCEGK
KLYAHKAICASRCEQLRAMFTWGKESKEQDINLPHTPYCAMYGVLEYIYCGQATIIWENA
CDLLQWADFFSLAGLKSSCEFYLWHYIDLENAPIILTVADRYRCTQLRNVAANFVLRNWD
KIKDSDVWINQVTVDVKNYISERIYSLITCSCGCICSCVDDAKNNNANSPSQIVIKLNQ*
lkknqnqiki

Frame B:
nnnnnnnnnnnndnrwfnitnryck*ktnqct*nrcsisiisnfteynri*i*kr*n*sk
psedr**rys*fnsntkiqeyr*kssilnnthyckline**ksystykiksi*cg*sicn
fkfftygfslsldnfttsytfitfkissssiiciilsi*fnke*ti*slkfgkd*v*---

---itfqciqklln*qkr*qinyrlknhqsl*iqqrlvqi*ksyliikniqmlyshvker
ncmhikrfvhrdann*eqcslgvrnqknkisiyhihptvrcmvc*stsivvkllsfgrmh
viycnglisflwlv*kvvvnfiygiili*rmllsf*l*livivvln*em*pltlfleigi
klkiltfg*iksllmlkiislkefil**lvlvvvfvvvlmmlkiimqilllkll*n*inn
*kkikiksk

Frame C:
iiiiiiiiiiimiiggstsptdianerqinvhrtdvqlassailqnitefrfekgeinpn
qvkivnegivdliliprskstdkrvqflttltianlsmndenhtaltkskafdvveafvt
snslhmdlvchwitlqphipllhskyhqvqlfalyclynlirneqykv*slerikc---

---lhsnasksc*iskkdsrsitd*rtishceynkdwyrfekvi**srifrcyihm*rke
ivct*sdlciemrtiesnvhlg*gikrtryqsttytllcdvwcvrvhllwssyyhlgecm
*siamg*flffgwfkk*l*ilfmaly*frecsyhfdcs*slslysikkcsr*lcs*klg*
n*rf*rldksshc*c*klyl*knlffnnlflwlyl*lc**c*k**ckfsfsncykiksii
kkksksnqn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL208 (SFL208Q) /CSM/SF/SFL2-A/SFL208Q.Seq.d/                       2343   0.0
CHQ546 (CHQ546Q) /CSM/CH/CHQ5-B/CHQ546Q.Seq.d/                       1354   0.0
AFM691 (AFM691Q) /CSM/AF/AFM6-D/AFM691Q.Seq.d/                       1283   0.0
CHF822 (CHF822Q) /CSM/CH/CHF8-A/CHF822Q.Seq.d/                       1203   0.0
CHH877 (CHH877Q) /CSM/CH/CHH8-D/CHH877Q.Seq.d/                       1166   0.0
SLG557 (SLG557Q) /CSM/SL/SLG5-C/SLG557Q.Seq.d/                        870   0.0
SFI714 (SFI714Q) /CSM/SF/SFI7-A/SFI714Q.Seq.d/                         42   0.021
AFO391 (AFO391Q) /CSM/AF/AFO3-D/AFO391Q.Seq.d/                         42   0.021
VFM532 (VFM532Q) /CSM/VF/VFM5-B/VFM532Q.Seq.d/                         40   0.082
VFM148 (VFM148Q) /CSM/VF/VFM1-B/VFM148Q.Seq.d/                         40   0.082
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.  1338   0.0    15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   3e-11  20
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             34   2e-07  30
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   1e-04  18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   2e-04  23
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    34   4e-04  17
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   5e-04  17
AC010196|AC010196.5 Homo sapiens 12 BAC RP11-202H2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   0.001  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   0.002  28
AX196296|AX196296.1 Sequence 3 from Patent WO0151627.              40   0.002  17
dna update 2004. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_61(AC116963|pid:none) Dictyostelium discoideum chromoso...   147   1e-33
AY074524_1(AY074524|pid:none) Arabidopsis thaliana unknown prote...    89   3e-16
FJ422582_1(FJ422582|pid:none) Arabidopsis thaliana ABAP1 (ABAP1)...    89   3e-16
DQ507278_1(DQ507278|pid:none) Drosophila melanogaster roadkill i...    85   6e-15
CP001159_136(CP001159|pid:none) Thalassiosira pseudonana CCMP133...    83   2e-14
CR848583_1(CR848583|pid:none) Xenopus tropicalis finished cDNA, ...    82   3e-14
BC155387_1(BC155387|pid:none) Xenopus tropicalis regulator of ch...    82   3e-14
AE014297_1843(AE014297|pid:none) Drosophila melanogaster chromos...    82   3e-14
AC132492_6(AC132492|pid:none) Oryza sativa (japonica cultivar-gr...    82   5e-14
AK317640_1(AK317640|pid:none) Arabidopsis thaliana AT5G19330 mRN...    80   1e-13
protein update 2009. 5.28
PSORT 

 psg: 0.87  gvh: 0.22  alm: 0.37  top: 0.43  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SFL208 is cyt
5' end seq. ID SFL208F
5' end seq. 
>SFL208F.Seq
CAATAATAATAATAATAATAATAATAATAATAATAATGATAATAGGTGGTTCAACATCAC
CAACAGATATTGCAAATGAAAGACAAATCAATGTACATAGAACAGATGTTCAATTAGCAT
CATCAGCAATTTTACAGAATATAACAGAATTTAGATTTGAAAAAGGTGAAATTAATCCAA
ACCAAGTGAAGATCGTTAATGAAGGTATAGTTGATTTAATTCTAATACCAAGATCCAAGA
GTACAGATAAAAGAGTTCAATTCTTAACAACACTCACTATTGCAAACTTATCAATGAATG
ATGAAAATCATACAGCACTTACAAAATCAAAAGCATTTGATGTGGTTGAAGCATTTGTAA
CTTCAAATTCTTTACATATGGATTTAGTTTGTCATTGGATAACTTTACAACCTCATATAC
CTTTATTACATTCAAAATATCATCAAGTTCAATTATTTGCATTATATTGTCTATATAATT
TAATAAGGAATGAACAATATAAAGTTTGAAGTTTGGAAAGGATTAAGTGTAA--------
--
Length of 5' end seq. 532
3' end seq. ID SFL208Z
3' end seq. 
>SFL208Z.Seq
----------TATTACATTCCAATGCATCCAAAAGTTGTTGAATTAGCAAAAAAGATAGC
AGATCAATTACAGATTGAAGAACCATCAGTCACTGTGAATACAACAAAGATTGGTACAGA
TTTGAAAAAGTTATTTAATAATCAAGAATATTCAGATGTTATATTCACATGTGAAGGAAA
GAAATTGTATGCACATAAAGCGATTTGTGCATCGAGATGCGAACAATTGAGAGCAATGTT
CACTTGGGGTAAGGAATCAAAAGAACAAGATATCAATCTACCACATACACCCTACTGTGC
GATGTATGGTGTGTTAGAGTACATCTATTGTGGTCAAGCTACTATCATTTGGGAGAATGC
ATGTGATCTATTGCAATGGGCTGATTTCTTTTCTTTGGCTGGTTTAAAAAGTAGTTGTGA
ATTTTATTTATGGCATTATATTGATTTAGAGAATGCTCCTATCATTTTGACTGTAGCTGA
TCGTTATCGTTGTACTCAATTAAGAAATGTAGCCGCTAACTTTGTTCTTAGAAATTGGGA
TAAAATTAAAGATTCTGACGTTTGGATAAATCAAGTCACTGTTGATGTTAAAAATTATAT
CTCTGAAAGAATTTATTCTTTAATAACTTGTTCTTGTGGTTGTATTTGTAGTTGTGTTGA
TGATGCTAAAAATAATAATGCAAATTCTCCTTCTCAAATTGTTATAAAATTAAATCAATA
ATTAAAAAAAAATCAAAATCAAATCAAAATC
Length of 3' end seq. 741
Connected seq. ID SFL208P
Connected seq. 
>SFL208P.Seq
CAATAATAATAATAATAATAATAATAATAATAATAATGATAATAGGTGGTTCAACATCAC
CAACAGATATTGCAAATGAAAGACAAATCAATGTACATAGAACAGATGTTCAATTAGCAT
CATCAGCAATTTTACAGAATATAACAGAATTTAGATTTGAAAAAGGTGAAATTAATCCAA
ACCAAGTGAAGATCGTTAATGAAGGTATAGTTGATTTAATTCTAATACCAAGATCCAAGA
GTACAGATAAAAGAGTTCAATTCTTAACAACACTCACTATTGCAAACTTATCAATGAATG
ATGAAAATCATACAGCACTTACAAAATCAAAAGCATTTGATGTGGTTGAAGCATTTGTAA
CTTCAAATTCTTTACATATGGATTTAGTTTGTCATTGGATAACTTTACAACCTCATATAC
CTTTATTACATTCAAAATATCATCAAGTTCAATTATTTGCATTATATTGTCTATATAATT
TAATAAGGAATGAACAATATAAAGTTTGAAGTTTGGAAAGGATTAAGTGTAA--------
--TATTACATTCCAATGCATCCAAAAGTTGTTGAATTAGCAAAAAAGATAGCAGATCAAT
TACAGATTGAAGAACCATCAGTCACTGTGAATACAACAAAGATTGGTACAGATTTGAAAA
AGTTATTTAATAATCAAGAATATTCAGATGTTATATTCACATGTGAAGGAAAGAAATTGT
ATGCACATAAAGCGATTTGTGCATCGAGATGCGAACAATTGAGAGCAATGTTCACTTGGG
GTAAGGAATCAAAAGAACAAGATATCAATCTACCACATACACCCTACTGTGCGATGTATG
GTGTGTTAGAGTACATCTATTGTGGTCAAGCTACTATCATTTGGGAGAATGCATGTGATC
TATTGCAATGGGCTGATTTCTTTTCTTTGGCTGGTTTAAAAAGTAGTTGTGAATTTTATT
TATGGCATTATATTGATTTAGAGAATGCTCCTATCATTTTGACTGTAGCTGATCGTTATC
GTTGTACTCAATTAAGAAATGTAGCCGCTAACTTTGTTCTTAGAAATTGGGATAAAATTA
AAGATTCTGACGTTTGGATAAATCAAGTCACTGTTGATGTTAAAAATTATATCTCTGAAA
GAATTTATTCTTTAATAACTTGTTCTTGTGGTTGTATTTGTAGTTGTGTTGATGATGCTA
AAAATAATAATGCAAATTCTCCTTCTCAAATTGTTATAAAATTAAATCAATAATTAAAAA
AAAATCAAAATCAAATCAAAATC
Length of connected seq. 1273
Full length Seq ID -
Full length Seq. -
Length of full length seq. -