SFL193
Library SF
(Link to library)
Clone ID SFL193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID SFL193P
(Link to Original site)
Representative DNA sequence
>SFL193 (SFL193Q) /CSM/SF/SFL1-D/SFL193Q.Seq.d/
AAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCCTT
GTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGTCATAAA
TCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGNGAACAAAAATGGGCTTGC
TNTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATCCAAT
AACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTACA
ACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTAAA
TCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAATCA
ATTTGTGAAGGTTTAAGCTCTGGXXXXXXXXXXCTTAAAGATGTCCCCCAAATCATGAAN
GTAGATTCAATGACCAAGNTCATCAANNCTGGGGTAAAGGNTCNCCCATGAATANATGTT
CATTAACGANGNCCNCATGNCCATGAATGTAAAGTTGATCCCAATGGTAAAGAAATGTTG
CGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCTCCAAAACA
TGAATGTAAATGTGATGATCATGGTAAAAAATGTTGTGTANAGATTCATTGTGATGAAGT
TTGTGATTTAGATTGTGGTNGAGGTTTTGAATGTNTAATTAGACATGATGGTTCAGANTG
TTGTGTCCGTTCAGAAAGACCNCACNCACCACAACATGAAAAATGTAATAANANATGCCC
ACCAGGCCATGAATGTANAGTTNATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAN
ACCACCNCCAAAATGCTCTTTAAGATGTCCNCCAAGACATGAATGTAGAGTCAACCACTT
TGGTGAAGAATGNTGTGTTAAAGTTCNCCACGATNAATGTTCATTNANATGTCCACCAGG
CCATGAATGTANANTTNATCAACATGGAAAAGAATGNTGCGNTGTTGCCCATAGACCACC
ACCAAAATGCTCANTAAGATGTCCACCNAAACATGAATGTAGANTCAATCACTTTGGTGA
AGAATGCTGTGTTAAAAGTAGANANGATTGTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
kk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEXCHKSSECIVINYTPCXGEQKWAC
XKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKITTPTEYSCSDAKIKECALLGK
SCSFQXNSCSNPTSCCPGESICEGLSS---

---LKDVPQIMXVDSMTKXIXXGVKXXP*ixvh*rxphxheckvdpngkemlrqip*ttt
trslfikmpskt*m*m**sw*kmlcxdsl**sl*frlwxrf*mxn*t*wfrxlcpfrktx
xttt*km**xmptrp*mxsxstwkrmlrccpxttxkmlfkmsxkt*m*sqplw*rmxc*s
sprxmfixmstrp*mxxxstwkrmxrccp*tttkmlxkmstxt*m*xqslw*rmlc*k*x
xl


Translated Amino Acid sequence (All Frames)
Frame A:
kk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEXCHKSSECIVINYTPCXGEQKWAC
XKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKITTPTEYSCSDAKIKECALLGK
SCSFQXNSCSNPTSCCPGESICEGLSS---

---LKDVPQIMXVDSMTKXIXXGVKXXP*ixvh*rxphxheckvdpngkemlrqip*ttt
trslfikmpskt*m*m**sw*kmlcxdsl**sl*frlwxrf*mxn*t*wfrxlcpfrktx
xttt*km**xmptrp*mxsxstwkrmlrccpxttxkmlfkmsxkt*m*sqplw*rmxc*s
sprxmfixmstrp*mxxxstwkrmxrccp*tttkmlxkmstxt*m*xqslw*rmlc*k*x
xl

Frame B:
knnkgccf*kileyfl*yslyqnpmrrivikllmkxnvinlrnvll*iihhvxxnkngla
xkvhlilvhmkivvieihpitkllkyqinasilmdllklqlqpsilvlmprlknvpy*vn
hvvskxtlvqiqlpvaqvnqfvkv*al---

---lkmspks*x*iq*pxssxlg*rxxhexmfinxxxmxmnvklipmvkkccvrshrppp
pevcslrcppkheckcddhgkkccvxihcdevcdldcgxgfecxirhdgsxccvrserph
xpqhekcnxxcppghecxvxqhgkeccvvahxpppkcslrcpprhecrvnhfgeexcvkv
xhdxcsxxcppghecxxxqhgkexcxvahrpppkcsxrcppkhecrxnhfgeeccvksrx
dc

Frame C:
kiikdvvskkywsifydipcikilcdgl**ny**rxms*ifgmycyklytmlxxtkmgll
*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*nynsnrvflf*cqd*rmclir*i
m*fpkxllfksnfllpr*inl*rfklw---

---*rcppnhexrfndqxhqxwgkgspmnxcsltxxxxp*m*s*sqw*rnvasdpidhhh
qkfvh*dalqnmnvnvmimvknvvxrfivmkfvi*ivvevlnv*ldmmvqxvvsvqkdxt
hhnmknvixxahqamnvxxinmeknvallpixhxqnal*dvxqdmnvesttlvknxvlkf
xtxnvhxxvhqamnvxxinmeknxaxlpidhhqnax*dvhxnmnvxsitlvknavlkvxx
iv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL193 (SFL193Q) /CSM/SF/SFL1-D/SFL193Q.Seq.d/ 1966 0.0
AHO313 (AHO313Q) /CSM/AH/AHO3-A/AHO313Q.Seq.d/ 1059 0.0
AHE865 (AHE865Q) /CSM/AH/AHE8-C/AHE865Q.Seq.d/ 1059 0.0
AHA324 (AHA324Q) /CSM/AH/AHA3-A/AHA324Q.Seq.d/ 1059 0.0
CHH443 (CHH443Q) /CSM/CH/CHH4-B/CHH443Q.Seq.d/ 1053 0.0
AFD272 (AFD272Q) /CSM/AF/AFD2-C/AFD272Q.Seq.d/ 1053 0.0
CHM493 (CHM493Q) /CSM/CH/CHM4-D/CHM493Q.Seq.d/ 1047 0.0
CHR563 (CHR563Q) /CSM/CH/CHR5-C/CHR563Q.Seq.d/ 1045 0.0
CHI363 (CHI363Q) /CSM/CH/CHI3-C/CHI363Q.Seq.d/ 1045 0.0
CHG879 (CHG879Q) /CSM/CH/CHG8-D/CHG879Q.Seq.d/ 1045 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117267|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, *** SEQUENCING IN PROGRESS ***. 950 0.0 8
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds. 950 0.0 7
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence. 950 0.0 8
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 42 3e-04 3
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 42 6e-04 3
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 42 0.038 4
BX914196|BX914196.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 50 0.072 1
BX005211|BX005211.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-128A7. 44 0.27 4
AC021039|AC021039.12 Homo sapiens chromosome 10 clone RP11-478K18, complete sequence. 36 0.50 7
AX458543|AX458543.1 Sequence 89 from Patent WO0246454. 32 0.62 7
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 365 e-107
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 150 1e-34
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 100 2e-19
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for... 97 8e-19
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 61 6e-08
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 53 2e-05
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 52 3e-05
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 52 3e-05
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 50 1e-04
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 50 2e-04
protein update 2009. 5.28
PSORT

psg: 1.02 gvh: 0.68 alm: 0.50 top: 0.27 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: extracellular, including cell wall
12.0 %: vacuolar
8.0 %: cytoplasmic
8.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for SFL193 is exc

5' end seq. ID SFL193F
5' end seq.
>SFL193F.Seq
AAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCCTT
GTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGTCATAAA
TCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGNGAACAAAAATGGGCTTGC
TNTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATCCAAT
AACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTACA
ACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTAAA
TCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAATCA
ATTTGTGAAGGTTTAAGCTCTGG----------
Length of 5' end seq. 443
3' end seq. ID SFL193Z
3' end seq.
>SFL193Z.Seq
----------CTTAAAGATGTCCCCCAAATCATGAANGTAGATTCAATGACCAAGNTCAT
CAANNCTGGGGTAAAGGNTCNCCCATGAATANATGTTCATTAACGANGNCCNCATGNCCA
TGAATGTAAAGTTGATCCCAATGGTAAAGAAATGTTGCGTCAGATCCCATAGACCACCAC
CACCAGAAGTTTGTTCATTAAGATGCCCTCCAAAACATGAATGTAAATGTGATGATCATG
GTAAAAAATGTTGTGTANAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTNGAG
GTTTTGAATGTNTAATTAGACATGATGGTTCAGANTGTTGTGTCCGTTCAGAAAGACCNC
ACNCACCACAACATGAAAAATGTAATAANANATGCCCACCAGGCCATGAATGTANAGTTN
ATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATANACCACCNCCAAAATGCTCTTTAA
GATGTCCNCCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGNTGTGTTAAAG
TTCNCCACGATNAATGTTCATTNANATGTCCACCAGGCCATGAATGTANANTTNATCAAC
ATGGAAAAGAATGNTGCGNTGTTGCCCATAGACCACCACCAAAATGCTCANTAAGATGTC
CACCNAAACATGAATGTAGANTCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAN
ANGATTGTT
Length of 3' end seq. 719
Connected seq. ID SFL193P
Connected seq.
>SFL193P.Seq
AAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCCTT
GTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGTCATAAA
TCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGNGAACAAAAATGGGCTTGC
TNTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATCCAAT
AACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTACA
ACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTAAA
TCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAATCA
ATTTGTGAAGGTTTAAGCTCTGG----------CTTAAAGATGTCCCCCAAATCATGAAN
GTAGATTCAATGACCAAGNTCATCAANNCTGGGGTAAAGGNTCNCCCATGAATANATGTT
CATTAACGANGNCCNCATGNCCATGAATGTAAAGTTGATCCCAATGGTAAAGAAATGTTG
CGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCTCCAAAACA
TGAATGTAAATGTGATGATCATGGTAAAAAATGTTGTGTANAGATTCATTGTGATGAAGT
TTGTGATTTAGATTGTGGTNGAGGTTTTGAATGTNTAATTAGACATGATGGTTCAGANTG
TTGTGTCCGTTCAGAAAGACCNCACNCACCACAACATGAAAAATGTAATAANANATGCCC
ACCAGGCCATGAATGTANAGTTNATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAN
ACCACCNCCAAAATGCTCTTTAAGATGTCCNCCAAGACATGAATGTAGAGTCAACCACTT
TGGTGAAGAATGNTGTGTTAAAGTTCNCCACGATNAATGTTCATTNANATGTCCACCAGG
CCATGAATGTANANTTNATCAACATGGAAAAGAATGNTGCGNTGTTGCCCATAGACCACC
ACCAAAATGCTCANTAAGATGTCCACCNAAACATGAATGTAGANTCAATCACTTTGGTGA
AGAATGCTGTGTTAAAAGTAGANANGATTGTT
Length of connected seq. 1162
Full length Seq ID -
Full length Seq. -
Length of full length seq. -