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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL192
Library SF
(Link to library)
Clone ID SFL192
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID SFL192P
(Link to Original site)
Representative DNA sequence 
>SFL192 (SFL192Q) /CSM/SF/SFL1-D/SFL192Q.Seq.d/
ATATTTATATATAATATTCACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAA
ACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCA
GTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCT
AAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACAT
ATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTA
TTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT
ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT
TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT
AGAATCAATGAGTTTAAATCCAATGGCATGGGATXXXXXXXXXXTGTCGCAGAGCGTTTT
GGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCC
GCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGAT
GGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGAT
TTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGT
CAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTG
GGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATT
ATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACT
AAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGT
AAGGTTTTGGGTTTGGATATGAACAAAGTTATCCAAATGGCTCTGGTATCGCTTTAGGTC
ATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTC
GTAAAGGTAAATAGGTGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ylyiiftp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvkl
keehskrqhqmiy*hqllnilsklpn*iqn*LEMLLWEQYYQDHHKVQPEVRVATLLAGL
PKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWD---

---VAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGI
REKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFA
AVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVIQ
MALVSL*vih*vllvpvkwlpfqenyivvkvnrc
Translated Amino Acid sequence (All Frames) 
Frame A:
ifiynihpitnkmsfnsrietisrhlstgpilesnptsgsvksgddivivapfrtaicka
krgafketapddllapvikhiikvtkldpkligdvvmgavlprssqgatrs*schiisrf
tkgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmg---

---crrafwchqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrry
p*enhrcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfc
ccrcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqsyp
ngsgialghplgatgarqmatisrelhrrkgk*v

Frame B:
ylyiiftp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvkl
keehskrqhqmiy*hqllnilsklpn*iqn*LEMLLWEQYYQDHHKVQPEVRVATLLAGL
PKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWD---

---VAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGI
REKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFA
AVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVIQ
MALVSL*vih*vllvpvkwlpfqenyivvkvnrc

Frame C:
iyi*ysphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*
krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnpklelphy*qvy
qrkyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhg---

---sqsvlvspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkvs
vrkpplqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*lll
lsvsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tklsk
wlwyrfrssircywcpsngyhfkritss*r*igv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL192 (SFL192Q) /CSM/SF/SFL1-D/SFL192Q.Seq.d/                       2238   0.0
AFJ735 (AFJ735Q) /CSM/AF/AFJ7-B/AFJ735Q.Seq.d/                       1251   0.0
SFF320 (SFF320Q) /CSM/SF/SFF3-A/SFF320Q.Seq.d/                       1241   0.0
SFF124 (SFF124Q) /CSM/SF/SFF1-A/SFF124Q.Seq.d/                       1241   0.0
VHE451 (VHE451Q) /CSM/VH/VHE4-C/VHE451Q.Seq.d/                       1233   0.0
VFL606 (VFL606Q) /CSM/VF/VFL6-A/VFL606Q.Seq.d/                       1233   0.0
VFJ317 (VFJ317Q) /CSM/VF/VFJ3-A/VFJ317Q.Seq.d/                       1233   0.0
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/                       1233   0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/                       1233   0.0
SLG762 (SLG762Q) /CSM/SL/SLG7-C/SLG762Q.Seq.d/                       1233   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1045   0.0    11
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    38   1e-14  6
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   4e-11  4
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    38   7e-11  5
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   3e-10  4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   2e-09  3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
CF609274|CF609274.1 INFIO01_000052 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    56   4e-08  3
dna update 2004. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   478   e-148
AK222103_1(AK222103|pid:none) Arabidopsis thaliana mRNA for 3-ke...   192   4e-72
AY383736_1(AY383736|pid:none) Glycine max 3-ketoacyl-CoA thiolas...   253   6e-72
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   251   2e-71
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   251   2e-71
AC126019_22(AC126019|pid:none) Medicago truncatula clone mth2-22...   251   6e-71
AF062589_2(AF062589|pid:none) Arabidopsis thaliana 3-keto-acyl-C...   248   1e-70
AK230209_1(AK230209|pid:none) Arabidopsis thaliana mRNA for pero...   248   1e-70
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   250   2e-70
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   250   2e-70
protein update 2009. 5.28
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFL192 is end
5' end seq. ID SFL192F
5' end seq. 
>SFL192F.Seq
ATATTTATATATAATATTCACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAA
ACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCA
GTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCT
AAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACAT
ATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTA
TTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT
ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT
TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT
AGAATCAATGAGTTTAAATCCAATGGCATGGGAT----------
Length of 5' end seq. 514
3' end seq. ID SFL192Z
3' end seq. 
>SFL192Z.Seq
----------TGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTG
TAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCG
TTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTA
TCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTG
GTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTA
TGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTG
CTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCG
CCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTT
TTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTATCC
AAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGC
TACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATAGGTGTA
Length of 3' end seq. 635
Connected seq. ID SFL192P
Connected seq. 
>SFL192P.Seq
ATATTTATATATAATATTCACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAA
ACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCA
GTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCT
AAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACAT
ATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTA
TTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT
ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT
TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT
AGAATCAATGAGTTTAAATCCAATGGCATGGGAT----------TGTCGCAGAGCGTTTT
GGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCC
GCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGAT
GGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGAT
TTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGT
CAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTG
GGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATT
ATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACT
AAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGT
AAGGTTTTGGGTTTGGATATGAACAAAGTTATCCAAATGGCTCTGGTATCGCTTTAGGTC
ATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTC
GTAAAGGTAAATAGGTGTA
Length of connected seq. 1149
Full length Seq ID -
Full length Seq. -
Length of full length seq. -