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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL191
Library SF
(Link to library)
Clone ID SFL191
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15329-1
Original site URL
Representative seq. ID SFL191P
(Link to Original site)
Representative DNA sequence 
>SFL191 (SFL191Q) /CSM/SF/SFL1-D/SFL191Q.Seq.d/
CACAACTCCTAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAACCNG
TCATAGATCAACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAATTA
CTTTTTACCATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAATTT
AAATTATATTCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCTCGA
AGCTTTATGCCAACTCTTTACAAATGGTGTCTCTGGCAAATTGGATAAACCCGAAGAACT
TGGTAAATGTATTGGTTTAGTATGCTTAAAGACTGGAGAAAATAATGAATTCTACCGTTA
TATTAAAACCACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAATGA
ATTAATGGCTGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTTGTACTGATCGTGA
CTCTTATAAACATACAATTTCCTTAXXXXXXXXXXAGAATATGATGATGATGAAGATTAT
GATGGTGAATATAATTATGATGAAGAAGAAGAAGAGATCGAAAGGGATTATAGAAGAAGT
AGTGATAATGGAGGTAAATCAGCAGCACCAATTGATCAATTAAATAATTTAAGTTTTAAT
GGTGATGAATATAATAGCGATGATGATGAGGAAGGTGAATTTAGTGAATATAGTGAAGAG
GATACAGTGAATCAATTCATTGTAGACGATGATCATATGGTACAAGTTATTGAAGGAACC
CTTAGTTTAAATAATGAAAAGGGTAAGAAAAAAATTCAATCCAAAACATTGTTACGTCAA
ATCCTTGGAAATTTAAAGGATGGTGATTCACCAAAAGAAACTATCATCATCTATGGTTTA
CCATTCCATTTCAGTGGTTGGAGAAAGTATATCCAATTGGAAGGTTTACGTAAACTCGTT
GGTAATGCTATGATGGCTCAATGGCAAAATCCATTAATTCAAAAACAATTTGGTATTGAA
ATTCCTGAAGGTAATCGTTTAAGAGAAGCCAAATACCAATTAAAAAGATCAATCTCTCAA
AAGAAAAAAGCAGACTATGATAGATCAGTTCGTTCAGAAAGACTTATTNAAAATAATGCT
GCCAATTATTTTTATAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ttpk**nf*KMNIREKKKTXHRSTVAVHKALNEKDREFNYFLPLLKEKKTSIVSNAINNL
NYILTYQSEREEQVSKDILEALCQLFTNGVSGKLDKPEELGKCIGLVCLKTGENNEFYRY
IKTTLSSIITDGEAHIKDNELMAAIYALSQSCFYCCTDRDSYKHTISL---

---EYDDDEDYDGEYNYDEEEEEIERDYRRSSDNGGKSAAPIDQLNNLSFNGDEYNSDDD
EEGEFSEYSEEDTVNQFIVDDDHMVQVIEGTLSLNNEKGKKKIQSKTLLRQILGNLKDGD
SPKETIIIYGLPFHFSGWRKYIQLEGLRKLVGNAMMAQWQNPLIQKQFGIEIPEGNRLRE
AKYQLKRSISQKKKADYDRSVRSERLIXNNAANYFYN
Translated Amino Acid sequence (All Frames) 
Frame A:
hns*iikflkneykrkkenxs*inscsp*stk*kr*ri*llftiikrkenkycikcnq*f
klysyisi*krrts*qrysrsfmptlykwclwqig*trrtw*mywfsmlkdwrk**ilpl
y*nhtlfnynrw*ssh*r**ingcnlcaisvmfllly*s*ll*tynfl---

---ri****rl*w*i*l**rrrrdrkgl*kk***wr*isstn*sik*fkf*w**i**r**
*gr*i**i**rgysesihcrr*sygtsy*rnp*fk**kg*eknsiqnivtsnpwkfkgw*
ftkrnyhhlwftipfqwlekvypigrft*trw*cydgsmaksinsktiwy*ns*r*sfkr
sqipikkinlskeksrl**issfrktyxk*ccqlfl**

Frame B:
ttpk**nf*KMNIREKKKTXHRSTVAVHKALNEKDREFNYFLPLLKEKKTSIVSNAINNL
NYILTYQSEREEQVSKDILEALCQLFTNGVSGKLDKPEELGKCIGLVCLKTGENNEFYRY
IKTTLSSIITDGEAHIKDNELMAAIYALSQSCFYCCTDRDSYKHTISL---

---EYDDDEDYDGEYNYDEEEEEIERDYRRSSDNGGKSAAPIDQLNNLSFNGDEYNSDDD
EEGEFSEYSEEDTVNQFIVDDDHMVQVIEGTLSLNNEKGKKKIQSKTLLRQILGNLKDGD
SPKETIIIYGLPFHFSGWRKYIQLEGLRKLVGNAMMAQWQNPLIQKQFGIEIPEGNRLRE
AKYQLKRSISQKKKADYDRSVRSERLIXNNAANYFYN

Frame C:
qllnnkifkk*i*ekkrkpvidqqlqsikh*mkkienlitfyhy*kkrkqvlyqmqsii*
iiflhinlkeknklakifsklyanslqmvslanwinpknlvnvlv*ya*rlekimnstvi
lkphslql*pmvkltlkimn*wlqsmrylshvsivvlivtliniqfp---

---nmmmmkimmvniimmkkkkrskgiieevvimevnqqhqlin*ii*vlmvmniiammm
rkvnlvnivkriq*insl*tmiiwykllkeplv*imkrvrkkfnpkhcyvkslei*rmvi
hqkklsssmvyhsisvvgesisnwkvyvnslvml*wlngkih*fknnlvlkflkviv*ek
pntn*kdqslkrkkqtmidqfvqkdlxkimlpiifii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL191 (SFL191Q) /CSM/SF/SFL1-D/SFL191Q.Seq.d/                       2085   0.0
AFD545 (AFD545Q) /CSM/AF/AFD5-B/AFD545Q.Seq.d/                       1203   0.0
AFK443 (AFK443Q) /CSM/AF/AFK4-B/AFK443Q.Seq.d/                       1201   0.0
VFD239 (VFD239Q) /CSM/VF/VFD2-B/VFD239Q.Seq.d/                       1197   0.0
CFK411 (CFK411Q) /CSM/CF/CFK4-A/CFK411Q.Seq.d/                       1191   0.0
SFD704 (SFD704Q) /CSM/SF/SFD7-A/SFD704Q.Seq.d/                       1189   0.0
CFH732 (CFH732Q) /CSM/CF/CFH7-B/CFH732Q.Seq.d/                       1189   0.0
AHD545 (AHD545Q) /CSM/AH/AHD5-B/AHD545Q.Seq.d/                       1189   0.0
AFH838 (AFH838Q) /CSM/AF/AFH8-B/AFH838Q.Seq.d/                       1189   0.0
AFK836 (AFK836Q) /CSM/AF/AFK8-B/AFK836Q.Seq.d/                       1183   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    48   2e-12  17
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    40   2e-09  21
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   1e-08  14
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   1e-08  18
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           50   2e-08  21
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    34   3e-08  16
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  38   7e-08  17
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    40   9e-08  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    48   1e-07  25
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    34   1e-07  17
dna update 2004. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT039425_1(BT039425|pid:none) Zea mays full-length cDNA clone ZM...    46   0.003
BT039414_1(BT039414|pid:none) Zea mays full-length cDNA clone ZM...    45   0.004
AK099482_1(AK099482|pid:none) Oryza sativa Japonica Group cDNA c...    44   0.014
BT065557_1(BT065557|pid:none) Zea mays full-length cDNA clone ZM...    40   0.12
BT037216_1(BT037216|pid:none) Zea mays full-length cDNA clone ZM...    40   0.12
CP000553_1667(CP000553|pid:none) Prochlorococcus marinus str. NA...    37   0.98
CR380959_190(CR380959|pid:none) Candida glabrata strain CBS138 c...    36   2.2
AP004996_15(AP004996|pid:none) Oryza sativa Japonica Group genom...    36   2.2
EU016592_31(EU016592|pid:none) Uncultured Group I marine crenarc...    35   4.9
AC135597_29(AC135597|pid:none) Oryza sativa chromosome 3 BAC OSJ...    35   6.3
protein update 2009. 5.28
PSORT 

 psg: 0.67  gvh: 0.32  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SFL191 is nuc
5' end seq. ID SFL191F
5' end seq. 
>SFL191F.Seq
CACAACTCCTAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAACCNG
TCATAGATCAACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAATTA
CTTTTTACCATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAATTT
AAATTATATTCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCTCGA
AGCTTTATGCCAACTCTTTACAAATGGTGTCTCTGGCAAATTGGATAAACCCGAAGAACT
TGGTAAATGTATTGGTTTAGTATGCTTAAAGACTGGAGAAAATAATGAATTCTACCGTTA
TATTAAAACCACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAATGA
ATTAATGGCTGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTTGTACTGATCGTGA
CTCTTATAAACATACAATTTCCTTA----------
Length of 5' end seq. 505
3' end seq. ID SFL191Z
3' end seq. 
>SFL191Z.Seq
----------AGAATATGATGATGATGAAGATTATGATGGTGAATATAATTATGATGAAG
AAGAAGAAGAGATCGAAAGGGATTATAGAAGAAGTAGTGATAATGGAGGTAAATCAGCAG
CACCAATTGATCAATTAAATAATTTAAGTTTTAATGGTGATGAATATAATAGCGATGATG
ATGAGGAAGGTGAATTTAGTGAATATAGTGAAGAGGATACAGTGAATCAATTCATTGTAG
ACGATGATCATATGGTACAAGTTATTGAAGGAACCCTTAGTTTAAATAATGAAAAGGGTA
AGAAAAAAATTCAATCCAAAACATTGTTACGTCAAATCCTTGGAAATTTAAAGGATGGTG
ATTCACCAAAAGAAACTATCATCATCTATGGTTTACCATTCCATTTCAGTGGTTGGAGAA
AGTATATCCAATTGGAAGGTTTACGTAAACTCGTTGGTAATGCTATGATGGCTCAATGGC
AAAATCCATTAATTCAAAAACAATTTGGTATTGAAATTCCTGAAGGTAATCGTTTAAGAG
AAGCCAAATACCAATTAAAAAGATCAATCTCTCAAAAGAAAAAAGCAGACTATGATAGAT
CAGTTCGTTCAGAAAGACTTATTNAAAATAATGCTGCCAATTATTTTTATAATAA
Length of 3' end seq. 645
Connected seq. ID SFL191P
Connected seq. 
>SFL191P.Seq
CACAACTCCTAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAACCNG
TCATAGATCAACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAATTA
CTTTTTACCATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAATTT
AAATTATATTCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCTCGA
AGCTTTATGCCAACTCTTTACAAATGGTGTCTCTGGCAAATTGGATAAACCCGAAGAACT
TGGTAAATGTATTGGTTTAGTATGCTTAAAGACTGGAGAAAATAATGAATTCTACCGTTA
TATTAAAACCACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAATGA
ATTAATGGCTGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTTGTACTGATCGTGA
CTCTTATAAACATACAATTTCCTTA----------AGAATATGATGATGATGAAGATTAT
GATGGTGAATATAATTATGATGAAGAAGAAGAAGAGATCGAAAGGGATTATAGAAGAAGT
AGTGATAATGGAGGTAAATCAGCAGCACCAATTGATCAATTAAATAATTTAAGTTTTAAT
GGTGATGAATATAATAGCGATGATGATGAGGAAGGTGAATTTAGTGAATATAGTGAAGAG
GATACAGTGAATCAATTCATTGTAGACGATGATCATATGGTACAAGTTATTGAAGGAACC
CTTAGTTTAAATAATGAAAAGGGTAAGAAAAAAATTCAATCCAAAACATTGTTACGTCAA
ATCCTTGGAAATTTAAAGGATGGTGATTCACCAAAAGAAACTATCATCATCTATGGTTTA
CCATTCCATTTCAGTGGTTGGAGAAAGTATATCCAATTGGAAGGTTTACGTAAACTCGTT
GGTAATGCTATGATGGCTCAATGGCAAAATCCATTAATTCAAAAACAATTTGGTATTGAA
ATTCCTGAAGGTAATCGTTTAAGAGAAGCCAAATACCAATTAAAAAGATCAATCTCTCAA
AAGAAAAAAGCAGACTATGATAGATCAGTTCGTTCAGAAAGACTTATTNAAAATAATGCT
GCCAATTATTTTTATAATAA
Length of connected seq. 1150
Full length Seq ID -
Full length Seq. -
Length of full length seq. -