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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL170
Library SF
(Link to library)
Clone ID SFL170
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15036-1
Original site URL
Representative seq. ID SFL170P
(Link to Original site)
Representative DNA sequence 
>SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/
ATTTGAAACTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTGAATATGCAAA
AACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTGCTGCTCATTT
ACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAGTGCAATCCAA
AGCATTGAGTGGTGTTGATAGTTTATTATCAATCGTTCAAATGCCTGCTGGTATTCCTGT
TGGTACTGTTGCAATTGGTGCTGCTGGTGCTACAAATGCTGCTTTATTATCTGCTGCTGT
TTTGGCTCCTTATTACCCTTCAATCGAGTTAAGTTTAGATTTATATAGAAAGAAACAAAC
TGATGCAGTCGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACTACTACTAC
TACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACAATTAATAG
TAATACATCATCACATAATAATAATCAACAACAGCAACAACAACAACAAACAATATTACC
AACACAXXXXXXXXXXGAGTGCAATTGAAAAGATTGGTNATCCAGCAATTCTTAAATCAA
ATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCTTGAAC
AAGCTTGGAAAAAGGTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATA
TAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAA
CCTTCCCATTGGTTACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAG
CTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTT
CCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAAANACAATGAAACA
GGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGG
ACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTG
CCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAA
ATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATA
CTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGNAGCAAAAGAAGGTC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
FETRIVSAHRTPDRLFEYAKTAKSRGLKIVIAGAGGAAHLPGMVAALTPLPVFGVPVQSK
ALSGVDSLLSIVQMPAGIPVGTVAIGAAGATNAALLSAAVLAPYYPSIELSLDLYRKKQT
DAVAEIPVDNPTSTSTTTTTTTTSNATSILSAIHTSTINSNTSSHNNNQQQQQQQQTILP
T---

---SAIEKIGXPAILKSNTMGYDGKGQVKLTDQVDLEQAWKKVTSETCATKAILEQYIEF
ESEASVIVARALDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNG
LVGIIAVELFVVKXQ*nrsilfngk*igtkttq*wsldhrrlcnlsi*tidslclwfafg
fsrfh*tyk*s*iysttnstncndksfrsrs*rlgkntsn*rftssylc*rxqkkv
Translated Amino Acid sequence (All Frames) 
Frame A:
i*n*ncist*nt**ii*icknske*rikncdcrcwwccsftwhgccinsiaciwctsaiq
siewc**fiinrsnacwyscwyccnwccwcykccfiicccfgsllpfnrvkfrfi*ketn
*csr*ntc**snininyyyyynyikcninfisnsyfnn***yiit***sttattttnnit
nt---

---ecn*kdwxssns*ikyygl*w*rss*inrssrs*tslekgyl*nlcnqsnt*tiyrv
*irsisycstcfrwnrvnlpigyq*ts*syftsnhctssiariys*tsq*nwfkdcsfqw
fgwyycrriicsextmkqvntl*w*mnwhqdhtivvigpskvv*plnlnn*fvvfvvclw
vqsislnv*vklnlfnnkfhql**qif*vkkltvgkkyfklkvhifismlkxakeg

Frame B:
FETRIVSAHRTPDRLFEYAKTAKSRGLKIVIAGAGGAAHLPGMVAALTPLPVFGVPVQSK
ALSGVDSLLSIVQMPAGIPVGTVAIGAAGATNAALLSAAVLAPYYPSIELSLDLYRKKQT
DAVAEIPVDNPTSTSTTTTTTTTSNATSILSAIHTSTINSNTSSHNNNQQQQQQQQTILP
T---

---SAIEKIGXPAILKSNTMGYDGKGQVKLTDQVDLEQAWKKVTSETCATKAILEQYIEF
ESEASVIVARALDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNG
LVGIIAVELFVVKXQ*nrsilfngk*igtkttq*wsldhrrlcnlsi*tidslclwfafg
fsrfh*tyk*s*iysttnstncndksfrsrs*rlgkntsn*rftssylc*rxqkkv

Frame C:
lklelyqhiehlidylnmqkqqrved*kl*lqvlvvlliylawllh*lhclylvyqcnpk
h*vvlivyyqsfkcllvfllvllqlvllvlqmllyylllfwllitlqss*v*iyiernkl
mqslkylliiqhqhqlllllqlhqmqhqfyqqfilqqlivihhhiiiinnsnnnnkqyyq
h---

---vqlkrlviqqflnqilwvmmvkvkln*piksilnklgkrlplklvqpkqylnni*sl
nqkhqll*hvl*meqs*pshwlpiniviifyvkplhqlncqnifinkpmklv*rllvpmv
wlvllpsnyl**kxnetgqyslmvnelaprphnsghwtiegcvtsqfeqlircvcglplg
svdftkriseaefiqqqippivmtnllgqevngwekilqtkgshlhiyakgskrr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1370   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1328   0.0
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1312   0.0
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1298   0.0
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       1285   0.0
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1247   0.0
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                       1205   0.0
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/                       1160   0.0
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                       1114   0.0
AHI390 (AHI390Q) /CSM/AH/AHI3-D/AHI390Q.Seq.d/                       1070   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U23210|U23210.1 Debaryomyces occidentalis phosphoribosylaminoimidazole carboxylase (ADE2) gene, complete cds.    62   1e-10  4
BT008606|BT008606.1 Arabidopsis thaliana clone U50031 putative phosphoribosylaminoimidazole carboxylase (At2g37690) mRNA, complete cds.    76   1e-09  1
BT005770|0    76   1e-09  1
AX507898|AX507898.1 Sequence 2593 from Patent WO0216655.           76   1e-09  1
AB034950|AB034950.1 Candida boidinii ADE2 gene for phosphoribosyl-5-aminoimidazole carboxylase, complete cds.    56   3e-07  3
AF349948|AF349948.1 Nicotiana tabacum phosphoribosylaminoimidazole carboxylase (AIRC) mRNA, partial cds.    66   1e-06  1
AY429422|AY429422.1 Nicotiana tabacum phosphoribosylaminoimidazole carboxylase (purEK) mRNA, partial cds.    66   1e-06  1
AR391994|AR391994.1 Sequence 2 from patent US 6613547.             56   2e-06  3
I87876|I87876.1 Sequence 1 from patent US 5716808.                 56   2e-06  3
BD298417|BD298417.1 Promoter and terminator of Pichia methanolica glyceryl aldehyde-3-phosphoric acid dehydrogenase 2.    56   2e-06  3
dna update 2004. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   105   1e-43
CP000699_3106(CP000699|pid:none) Sphingomonas wittichii RW1, com...    99   6e-41
AP009384_2414(AP009384|pid:none) Azorhizobium caulinodans ORS 57...    99   2e-40
CP000774_2062(CP000774|pid:none) Parvibaculum lavamentivorans DS...   101   4e-40
CP000943_2544(CP000943|pid:none) Methylobacterium sp. 4-46, comp...    96   7e-39
AP006627_1021(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...   101   3e-38
CP000781_1245(CP000781|pid:none) Xanthobacter autotrophicus Py2,...    94   4e-38
AE008692_1421(AE008692|pid:none) Zymomonas mobilis subsp. mobili...   100   1e-37
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...    97   5e-37
CP001175_775(CP001175|pid:none) Listeria monocytogenes HCC23, co...   111   5e-37
protein update 2009. 5.28
PSORT 

 psg: 0.52  gvh: 0.63  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SFL170 is cyt
5' end seq. ID SFL170F
5' end seq. 
>SFL170F.Seq
ATTTGAAACTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTGAATATGCAAA
AACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTGCTGCTCATTT
ACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAGTGCAATCCAA
AGCATTGAGTGGTGTTGATAGTTTATTATCAATCGTTCAAATGCCTGCTGGTATTCCTGT
TGGTACTGTTGCAATTGGTGCTGCTGGTGCTACAAATGCTGCTTTATTATCTGCTGCTGT
TTTGGCTCCTTATTACCCTTCAATCGAGTTAAGTTTAGATTTATATAGAAAGAAACAAAC
TGATGCAGTCGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACTACTACTAC
TACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACAATTAATAG
TAATACATCATCACATAATAATAATCAACAACAGCAACAACAACAACAAACAATATTACC
AACACA----------
Length of 5' end seq. 546
3' end seq. ID SFL170Z
3' end seq. 
>SFL170Z.Seq
----------GAGTGCAATTGAAAAGATTGGTNATCCAGCAATTCTTAAATCAAATACTA
TGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCTT
GGAAAAAGGTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGT
TTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCC
CATTGGTTACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAAT
TGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATG
GTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAAANACAATGAAACAGGTCAA
TACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATC
GAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTG
GGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCA
CCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAA
ACTAAAGGTTCACATCTTCATATCTATGCTAAAGGNAGCAAAAGAAGGTC
Length of 3' end seq. 700
Connected seq. ID SFL170P
Connected seq. 
>SFL170P.Seq
ATTTGAAACTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTGAATATGCAAA
AACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTGCTGCTCATTT
ACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAGTGCAATCCAA
AGCATTGAGTGGTGTTGATAGTTTATTATCAATCGTTCAAATGCCTGCTGGTATTCCTGT
TGGTACTGTTGCAATTGGTGCTGCTGGTGCTACAAATGCTGCTTTATTATCTGCTGCTGT
TTTGGCTCCTTATTACCCTTCAATCGAGTTAAGTTTAGATTTATATAGAAAGAAACAAAC
TGATGCAGTCGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACTACTACTAC
TACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACAATTAATAG
TAATACATCATCACATAATAATAATCAACAACAGCAACAACAACAACAAACAATATTACC
AACACA----------GAGTGCAATTGAAAAGATTGGTNATCCAGCAATTCTTAAATCAA
ATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCTTGAAC
AAGCTTGGAAAAAGGTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATA
TAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAA
CCTTCCCATTGGTTACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAG
CTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTT
CCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAAANACAATGAAACA
GGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGG
ACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTG
CCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAA
ATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATA
CTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGNAGCAAAAGAAGGTC
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -