SFL148
Library SF
(Link to library)
Clone ID SFL148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID SFL148P
(Link to Original site)
Representative DNA sequence
>SFL148 (SFL148Q) /CSM/SF/SFL1-B/SFL148Q.Seq.d/
ATTTTTTTTTCCATTGATAAAATTAAATTAAATAAAATGTCTTAAATATTGAAAAAGTTA
AAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTG
AAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAG
AAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTG
AAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAA
CTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTG
ATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATG
GTCGTGGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCA
TTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTAXXXXXXXXXXTTCGTCAAGT
TTTAGATCGTGCTGAAAATCAATTAACTGGTGAAGTCGATAAAAGATTACACGTTGAAAT
TCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTA
TGATGAATTCTCATGGTACAAAAATACCACTCCANGTCACTAAAGATTTAACCCAATTGA
TGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACA
CTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTAC
CACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATC
CACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCAC
CACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCA
AAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACC
GTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCAGGTCC
AAATNAATTCTTAGATATTCCATTGCCAAGAAATTATTAAGTTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
iffsidkiklnkms*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqk
kqfny*rngs*hkvskvfhvklkelkd*hqlfsw*SKQPKLKKLKLYFYMVTWINNHHSL
MHGMKDYIHTKQSSRITNSMVVGGADDGYSTFASISAIKALQEQSIPHDRYVI---

---RQVLDRAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPXH*
rfnpiddqqnlvsnylhhrc*rysthfkcw*chenshhr*s*csfttiiqss*cincikr
nfrn*stiwc*sylqng*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpih
envt*pfqlsiyrywfirsrfkcsgpnxfldiplprny*v


Translated Amino Acid sequence (All Frames)
Frame A:
iffsidkiklnkms*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqk
kqfny*rngs*hkvskvfhvklkelkd*hqlfsw*SKQPKLKKLKLYFYMVTWINNHHSL
MHGMKDYIHTKQSSRITNSMVVGGADDGYSTFASISAIKALQEQSIPHDRYVI---

---fvkf*ivlkin*lvksikdytlkfhniv*iksqnvlkf*akpsmmnshgtkiplxvt
kdltqlminktwypticitgaegiphtsnagnvmrthttvkvsvrlppsfkaadastvlk
eifetnppygaevtfkmdkcasgwdspqtrpelekalgeasnlffgkdhvymgeggsipf
mkmlhdrfncqfivtgllgpgsnaqvqxns*ifhcqeiikl

Frame B:
fffplikln*ikclky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyrr
snsiiremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*
cmg*ritsiqsshqe*qtlwswvvqmmviqhllqslqskhcknnqfhmivm*l---

---sssfrsc*ksinw*sr*kitr*nsttsfrsnrkmc*nfrrnhl**ilmvqkyhsxsl
ki*pn**stklgiqlfaspvlkvfhtlqmlvms*eltpplklvfvyhhhskqlmhqly*k
kfsklihhmvlklpskwinvlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs
*kcymtvsivnlsllvy*vqvqmlrskxilrysiakklls

Frame C:
fffh**n*ik*nvlniekvkefsnkawdenilptlskyieipnqsplydaewatngytee
aiqllekwilaqgikgisceikriegltpiifmvveatktekvktvllyghmdkqppltd
awdeglhpykaviknnklygrgwcr*wlfnicfnlcnqsiartinst*slcn---

---RQVLDRAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPXH*
rfnpiddqqnlvsnylhhrc*rysthfkcw*chenshhr*s*csfttiiqss*cincikr
nfrn*stiwc*sylqng*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpih
envt*pfqlsiyrywfirsrfkcsgpnxfldiplprny*v

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL148 (SFL148Q) /CSM/SF/SFL1-B/SFL148Q.Seq.d/ 2153 0.0
AFD651 (AFD651Q) /CSM/AF/AFD6-C/AFD651Q.Seq.d/ 1267 0.0
SFH222 (SFH222Q) /CSM/SF/SFH2-A/SFH222Q.Seq.d/ 1261 0.0
AFB648 (AFB648Q) /CSM/AF/AFB6-B/AFB648Q.Seq.d/ 1255 0.0
AFE642 (AFE642Q) /CSM/AF/AFE6-B/AFE642Q.Seq.d/ 1249 0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/ 1247 0.0
SFG389 (SFG389Q) /CSM/SF/SFG3-D/SFG389Q.Seq.d/ 1247 0.0
CFJ404 (CFJ404Q) /CSM/CF/CFJ4-A/CFJ404Q.Seq.d/ 1247 0.0
AHL611 (AHL611Q) /CSM/AH/AHL6-A/AHL611Q.Seq.d/ 1247 0.0
AFO706 (AFO706Q) /CSM/AF/AFO7-A/AFO706Q.Seq.d/ 1247 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 40 0.024 8
AL354810|AL354810.8 Human DNA sequence from clone RP11-527N12 on chromosome 13. 38 0.043 10
AX489336|AX489336.1 Sequence 6636 from Patent WO02053728. 36 0.23 3
BI435853|BI435853.1 EST538614 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence. 48 0.29 1
BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence. 48 0.29 1
BQ112173|BQ112173.1 EST597749 mixed potato tissues Solanum tuberosum cDNA clone STMCF59 3' end, mRNA sequence. 48 0.29 1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence. 48 0.29 1
CK276169|CK276169.1 EST722247 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADR82 3' end, mRNA sequence. 48 0.29 1
CK266014|CK266014.1 EST712092 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAC219 3' end, mRNA sequence. 48 0.29 1
CK261663|CK261663.1 EST707741 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABB34 3' end, mRNA sequence. 48 0.29 1
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ384330_1(DQ384330|pid:none) Hartmannella vermiformis succinyl-... 153 4e-42
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 150 2e-41
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi... 153 2e-41
AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2... 152 7e-41
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55... 154 8e-40
DQ384331_1(DQ384331|pid:none) Physarum polycephalum succinyl-dia... 134 2e-39
CP000512_4684(CP000512|pid:none) Acidovorax avenae subsp. citrul... 142 5e-38
CP001392_3415(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 136 9e-38
CP000316_4777(CP000316|pid:none) Polaromonas sp. JS666, complete... 135 2e-37
CP000267_395(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 139 3e-37
protein update 2009. 5.28
PSORT

psg: 0.90 gvh: 0.29 alm: 0.52 top: 0.47 tms: 0.00 mit: 0.29 mip: 0.08
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for SFL148 is cyt

5' end seq. ID SFL148F
5' end seq.
>SFL148F.Seq
ATTTTTTTTTCCATTGATAAAATTAAATTAAATAAAATGTCTTAAATATTGAAAAAGTTA
AAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTG
AAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAG
AAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTG
AAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAA
CTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTG
ATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATG
GTCGTGGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCA
TTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTA----------
Length of 5' end seq. 520
3' end seq. ID SFL148Z
3' end seq.
>SFL148Z.Seq
----------TTCGTCAAGTTTTAGATCGTGCTGAAAATCAATTAACTGGTGAAGTCGAT
AAAAGATTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAA
ATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCANGTCAC
TAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGG
TGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGT
TAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAA
AGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATG
TGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGC
TTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATT
CATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCC
AGGTTCAAATGCTCAGGTCCAAATNAATTCTTAGATATTCCATTGCCAAGAAATTATTAA
GTTG
Length of 3' end seq. 654
Connected seq. ID SFL148P
Connected seq.
>SFL148P.Seq
ATTTTTTTTTCCATTGATAAAATTAAATTAAATAAAATGTCTTAAATATTGAAAAAGTTA
AAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTG
AAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAG
AAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTG
AAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAA
CTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTG
ATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATG
GTCGTGGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCA
TTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTA----------TTCGTCAAGT
TTTAGATCGTGCTGAAAATCAATTAACTGGTGAAGTCGATAAAAGATTACACGTTGAAAT
TCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTA
TGATGAATTCTCATGGTACAAAAATACCACTCCANGTCACTAAAGATTTAACCCAATTGA
TGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACA
CTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTAC
CACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATC
CACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCAC
CACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCA
AAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACC
GTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCAGGTCC
AAATNAATTCTTAGATATTCCATTGCCAAGAAATTATTAAGTTG
Length of connected seq. 1174
Full length Seq ID -
Full length Seq. -
Length of full length seq. -