>SFL145 (SFL145Q) /CSM/SF/SFL1-B/SFL145Q.Seq.d/
GTCTTCGTGAAGAATATGAAAGAAGATTAAATTGGAACTTCAAAAGAAATTGGAAATCGA
GAGACATGAACAAGAATTGACCAGAAGAAAACAATTGGAACTTGAACAAATTATGATCCT
CAAGAAACAAGAAGAGGCAGGACTCCGTATTCTTCAAGAACAAAGAGAACATCAAGAAAA
AGTTCGTCTTGCTAAAGAGAAAGAGGAGGAATTAAAAAAAAGAACTATGGAAGAAGAAGC
AAGGAGATCGGCAATTCGTGCACAAGAAATTGCAAGAATGTCTAAACAACAACAACTCGA
AGAGGAAGCCAAACGTTTGGAACAACAAAAGAGACAAGAAGCAGAGTTTATACTTGCATT
GGAAACCAAATCCAAAGAGGCCAACCTTATGCAACAACAAGCCTTTTTCTTAAAACAAAA
AGAACAAGAGAATCTCCAATTGATTGAAAAACAAAAGAAAGAGATCTATGAAAATCAAAT
TCAAATTGATATTTTGAAACTAAAAGAAATGGAATCTCAAAATCAAAGCAAATCAATGTT
GGAGAAAGCTCAACAAGAAATXXXXXXXXXX

ss*ri*KKIKLELQKKLEIERHEQELTRRKQLELEQIMILKKQEEAGLRILQEQREHQEK
VRLAKEKEEELKKRTMEEEARRSAIRAQEIARMSKQQQLEEEAKRLEQQKRQEAEFILAL
ETKSKEANLMQQQAFFLKQKEQENLQLIEKQKKEIYENQIQIDILKLKEMESQNQSKSML
EKAQQE---

Frame A:
vfvknmked*igtskeignret*tridqkktigt*tnydpqetrrgrtpyssrtkrtsrk
sssc*rerggikkknygrrskeignsctrncknv*ttttrrgsqtfgttketrsrvytci
gnqiqrgqpyattslflktkrtrespid*ktkerdl*ksnsn*yfetkrngiskskqinv
gesstr---


Frame B:
ss*ri*KKIKLELQKKLEIERHEQELTRRKQLELEQIMILKKQEEAGLRILQEQREHQEK
VRLAKEKEEELKKRTMEEEARRSAIRAQEIARMSKQQQLEEEAKRLEQQKRQEAEFILAL
ETKSKEANLMQQQAFFLKQKEQENLQLIEKQKKEIYENQIQIDILKLKEMESQNQSKSML
EKAQQE---


Frame C:
lreeyerrlnwnfkrnwksrdmnkn*peennwnlnkl*ssrnkkrqdsvffknkenikkk
fvllkrkrrn*kkelwkkkqgdrqfvhkklqeclnnnnskrkpnvwnnkrdkkqslylhw
kpnpkrptlcnnkpfs*nkknkrisn*lknkrkrsmkikfklif*n*kkwnlkikanqcw
rklnkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL145 (SFL145Q) /CSM/SF/SFL1-B/SFL145Q.Seq.d/                       1065   0.0
SFK893 (SFK893Q) /CSM/SF/SFK8-D/SFK893Q.Seq.d/                       1043   0.0
AFE439 (AFE439Q) /CSM/AF/AFE4-B/AFE439Q.Seq.d/                        381   e-105
VFM382 (VFM382Q) /CSM/VF/VFM3-D/VFM382Q.Seq.d/                        216   3e-55
VHP620 (VHP620Q) /CSM/VH/VHP6-A/VHP620Q.Seq.d/                         38   0.14
VHL743 (VHL743Q) /CSM/VH/VHL7-B/VHL743Q.Seq.d/                         38   0.14
VHI820 (VHI820Q) /CSM/VH/VHI8-A/VHI820Q.Seq.d/                         38   0.14
VHI242 (VHI242Q) /CSM/VH/VHI2-B/VHI242Q.Seq.d/                         38   0.14
VHE470 (VHE470Q) /CSM/VH/VHE4-C/VHE470Q.Seq.d/                         38   0.14
VHA558 (VHA558Q) /CSM/VH/VHA5-C/VHA558Q.Seq.d/                         38   0.14

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.   674   0.0    3
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    34   2e-04  14
AL035538|AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA  project).    36   6e-04  9
AC027524|AC027524.4 Homo sapiens chromosome 18 clone RP11-317G1 map 18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   6e-04  10
AC129786|AC129786.4 Rattus norvegicus clone CH230-13M11, WORKING DRAFT SEQUENCE, 1 ordered piece.    36   0.001  9
BG750712|BG750712.1 602708593F1 NIH_MGC_43 Homo sapiens cDNA clone IMAGE:4845046 5', mRNA sequence.    38   0.003  4
AC072051|AC072051.8 Homo sapiens chromosome , clone RP11-79D21, complete sequence.    36   0.004  8
AW334837|AW334837.1 S39G7 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   0.009  1
AW334779|AW334779.1 S37H8 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   0.009  1
AC098321|AC098321.4 Rattus norvegicus clone CH230-1M1, WORKING DRAFT SEQUENCE, 2 unordered pieces.    52   0.009  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L04159_1(L04159|pid:none) Plasmodium falciparum unknown gene.          56   7e-07
AL844509_349(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    56   7e-07
AF312916_1(AF312916|pid:none) Plasmodium falciparum reticulocyte...    56   7e-07
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    54   2e-06
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    54   2e-06
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    54   2e-06
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    54   3e-06
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    52   1e-05
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    52   1e-05
CP001454_12(CP001454|pid:none) Borrelia burgdorferi WI91-23 plas...    52   1e-05

 psg: 0.36  gvh: 0.15  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SFL145 is nuc

>SFL145F.Seq
GTCTTCGTGAAGAATATGAAAGAAGATTAAATTGGAACTTCAAAAGAAATTGGAAATCGA
GAGACATGAACAAGAATTGACCAGAAGAAAACAATTGGAACTTGAACAAATTATGATCCT
CAAGAAACAAGAAGAGGCAGGACTCCGTATTCTTCAAGAACAAAGAGAACATCAAGAAAA
AGTTCGTCTTGCTAAAGAGAAAGAGGAGGAATTAAAAAAAAGAACTATGGAAGAAGAAGC
AAGGAGATCGGCAATTCGTGCACAAGAAATTGCAAGAATGTCTAAACAACAACAACTCGA
AGAGGAAGCCAAACGTTTGGAACAACAAAAGAGACAAGAAGCAGAGTTTATACTTGCATT
GGAAACCAAATCCAAAGAGGCCAACCTTATGCAACAACAAGCCTTTTTCTTAAAACAAAA
AGAACAAGAGAATCTCCAATTGATTGAAAAACAAAAGAAAGAGATCTATGAAAATCAAAT
TCAAATTGATATTTTGAAACTAAAAGAAATGGAATCTCAAAATCAAAGCAAATCAATGTT
GGAGAAAGCTCAACAAGAAAT----------